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Report for Sequence Feature Glyma14g23990

Feature Type:gene_model
Chromosome:Gm14
Start:28564015
stop:28571428
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75630AT Annotation by Michelle Graham. TAIR10: vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 | chr1:28400662-28402032 FORWARD LENGTH=166 SoyBaseE_val: 1.00E-108ISS
GO:0015991GO-bp Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0033177GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting two-sector ATPase complex, proton-transporting domain SoyBaseN/AISS
GO:0033179GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting V-type ATPase, V0 domain SoyBaseN/AISS
GO:0015078GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transmembrane transporter activity SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
KOG0232 KOG Vacuolar H+-ATPase V0 sector, subunits c/c' JGI ISS
PTHR10263Panther VACUOLAR ATP SYNTHASE PROTEOLIPID SUBUNIT JGI ISS
PF00137PFAM ATP synthase subunit C JGI ISS
UniRef100_B3TLT5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar H+-ATP synthase 16kDa proteolipid subunit n=1 Tax=Elaeis guineensis RepID=B3TLT5_ELAGV SoyBaseE_val: 4.00E-107ISS
UniRef100_I1LW89UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LW89_SOYBN SoyBaseE_val: 2.00E-107ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g23990 not represented in the dataset

Glyma14g23990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g03470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g151400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma14g23990.1   sequence type=CDS   gene model=Glyma14g23990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGCTTCAGTGGCGACGAAACCGCTCCTTTCTTCGGCTTCCTCGGTGCCGCTGCGGCCCTCGTCTTCTCCTGTATGGGAGCGGCGTACGGAACGGCAAAGAGTGGGGTGGGGGTGGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGTTATGGCGGGAGTGTTGGGGATTTACGGTTTGATTATTGCGGTTATTATCAGCACTGGGATAAACCCAAAGGCTAAGTCTTACTATCTCTTTGATGGCTATGCCCACTTGTCCTCTGGCCTCGCCTGTGGCCTCGCTGGCCTCTCTGCTGGAATGGCCATTGGGATTGTTGGTGATGCTGGTGTCAGGGCTAATGCCCAGCAGCCGAAGCTGTTTGTTGGTATGATTCTTATCTTGATTTTCGCTGAAGCTCTTGCTCTGTATGGCCTCATTGTGGGTATCATCCTCTCATCTCGGGCAGGCCAATCTCGTGCTGATTAA

>Glyma14g23990.1   sequence type=predicted peptide   gene model=Glyma14g23990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD*







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