SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G08320 | AT | Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:5252853-5254990 FORWARD LENGTH=426 | SoyBase | E_val: 1.00E-126 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| KOG0553 | KOG | TPR repeat-containing protein | JGI | ISS | |
| PTHR22904 | Panther | CHAPERONE BINDING PROTEIN | JGI | ISS | |
| PTHR22904:SF11 | Panther | SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT-CONT | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| PF07719 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| UniRef100_G7I8F3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Small glutamine-rich tetratricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7I8F3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LW70 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LW70_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g23650 not represented in the dataset |
Glyma14g23650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g03270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g149300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g23650.3 sequence type=transcript gene model=Glyma14g23650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAAATTTAGAAGTTTTTAAAAGGGCCTTGTTGGGGAAGTGACTTTGGAGGTTGTTGAGTGAATAAAATGGCTTGCGGTGAGAGGTTTTGATGGGAAAATATGGAATCACACACTTGGATAGTCTTGTAGGGGGTTGTTGTGATAAGAGGGGTTCCCAATGGTGGTGTGATCTCATGAGTGTTTGTGAGATTTTTGAGAATGGGTTGGGGTGGTTTCAAAAAACGGGTTAAAAGAACAGTGGGGGTTGGGAGGGAAGTGAGATTTTGGGATGCTAAGTGGGTTGGAGAGGAAGCTTTGTGTACCACCTTCAATAGACTTTACTCAACAAAAAAATAGTAATATTGTTGATATGGGATTTTGGTGTGGGAAAGAGTGGAGATGGGACCTCTTATGGAGGAGACCGTGGTTTACATGGGAACAATCTTTAGTGCAAAAACTAATGGGTGTTATTGGGGAATTTGGGCCATACAAAAATGGTAGGGACGGATGGATGTCGAGTAACAATGCGGAGAAAAAATGTGGTCAAACATGTTTATGGAGAGTTGATTAATAGAGATGCTGGAGAGGATCGAAGTTTCTATAAACAACTATGGAGACTACCTATTCCCTCAAAGGTCAAAGGTTTAGTGTGGAGAGTGTCCCATAAGAGACTCTAAACGAAGGATAATTTGCATAGAAGAAACATCCTTCCACATGGTTCCAACACATCTTGCGTTTTCTGCAATTCTAGTGTTGAAACTTCTGAACATTTGCTTTTTGTGTGCTGTTTCTCTCAAGTATTTGGTCAAGATGCTATGCTTGGCTTGGTGACATGAGGGCACTGCCATCTGAATGCAAGCAACACCTTTGGCAACATGCGTGGAACGTTAGAGGACCCAACTCTAATCTGGTTTGGTGGGCTGTATGGGCCTCAGTAGTTTGGGAGATTTGGAAGCAAAGAAACAATATCATCTTCAACCAGGGACACTGGGATTTGGACTCGGTTATGGATGCTATTCAGTACAGGGTCTGGAGCTGCTGTAAGGAAATGGAAAGATGTGATTGTCACCAATTTAGTTTGAAGAATTTGGCTGAATCACTAAAAACACTAGGTAACAAGGCAATGCAATCTAAGAAATACTCTGATGCAATTGAGTTGTATAATTGTGCCATTGCAGTCCATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCTTACACTCAGATTAACAAATATACAGAAGCAATCCAAGATTGTCTTAGATCCATTGAGATTGATCCAAACTATACCAAGGCATACAGTCGTCTGGGTTTGGTTTATTATGCACAAGGAAATTACAGAGATGCTATTCATAAAGGCTTTAGAAAAGCCTTGCAGTTGGATCCCAATAATGAGTCTGTCAAAGAAAATATACGGGTGGCTGAGCGTAAATTACTAGAAGAGCAACACCGTGCATATCCCAACCAGAATACAAGATCATCTCAAGAATTCCCAAACCAATCTGCACAAGGAGGATCAAGAAGCCATGGCGAGCCACCTCCATTTTCCTCTATGCCGTTTAACCCCCGTGATATTGCAAGCATGTTCATGAACTTCACGAACGCTACAAATGCACAGCAGCAGGGGTCACATTCTCAGGAAAGGCAAGAAGATAGCAATGGTAGTGGAGCTAGTGAGCCTGAAATAAGAATTGGGGGAAATATTAGTGTAAACATGGAGGACATGCCAGAGGATATAACAGGGGCCTTTCAATCTATGATGGAAATGTTATCTGGGGCTGCACCCCCCGGGCAACCGCAAGATCAAATGAATGGAAGAGCAGCACCAAACTAAGCTATTTCAGCATTCTGAGACTGTAAAGACTCAGACTCACAAAAGTGTTAAATATTTTTTTTGCTTGTTTAATATTTTTGACAGATTACAGCATTAACTAACAAAATTCTGTGTTTACATCATATAGAGCTTTTGAGGCACTACCCTTTTCGGAAGCACAATATATAGTTGCCTTTCGCGCAATATCCATACCTTACAAGCCTATGGGCTGGGACGTGTAATTTACTAAAGGGCATAGTTGTCGTAGCCAAGTTTAGATGATCATTTCTTGCAAATCTTTTTTGTGTATACTGTGAAGAAAATAAAATGGTAAAATGAATTAAACTTTTTT
>Glyma14g23650.2 sequence type=CDS gene model=Glyma14g23650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCACAATCACATCGCCACCGATTCACCTCTCTCTCGGCGCATAGTTCGTGCCTTCCTCTACTTCCTCAACTCTGTTGAACCGGGTCCTGGGGTTGATGCTGAGGGCATTGAGGTTGCTAGGGAGTGTTTGGCAGAGGCTTTTAAGCTTAATTCATCTCCTGTGGCTGGTGATGATGTGAAATCTGATTCATTGATTGACATATTCAAGTCTCTTGAAGCTAACAAGCAATGTGAAACTAGTAAGTCAGACGTTGGTCCACTGCCGGATTCTGCGGATGCTTCAAGTTCATTCTTGGGTGAGAATCCTGCTCGTGGGAAGAATCATTCTGAGGCGTCGAAATCTACGGATGAAGATTCAACACAAGGCCCTCATGCTTTTGTATCTAAAGATGAACTGTGCGGACAATTCTTTGCTGCTCTGGAGAAAAATCACTATTTTTGGAGCAATACTGATGGGAGTGATGATCCTGGGCAACTGGAGAAAGCTAGTTGTTTATTCGATGAGGCTTGTATGGAAATGGAAAGATGTGATTGTCACCAATTTAGTTTGAAGAATTTGGCTGAATCACTAAAAACACTAGGTAACAAGGCAATGCAATCTAAGAAATACTCTGATGCAATTGAGTTGTATAATTGTGCCATTGCAGTCCATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCTTACACTCAGATTAACAAATATACAGAAGCAATCCAAGATTGTCTTAGATCCATTGAGATTGATCCAAACTATACCAAGGCATACAGTCGTCTGGGTTTGGTTTATTATGCACAAGGAAATTACAGAGATGCTATTCATAAAGGCTTTAGAAAAGCCTTGCAGTTGGATCCCAATAATGAGTCTGTCAAAGAAAATATACGGGTGGCTGAGCGTAAATTACTAGAAGAGCAACACCGTGCATATCCCAACCAGAATACAAGATCATCTCAAGAATTCCCAAACCAATCTGCACAAGGAGGATCAAGAAGCCATGGCGAGCCACCTCCATTTTCCTCTATGCCGTTTAACCCCCGTGATATTGCAAGCATGTTCATGAACTTCACGAACGCTACAAATGCACAGCAGCAGGGGTCACATTCTCAGGAAAGGCAAGAAGATAGCAATGGTAGTGGAGCTAGTGAGCCTGAAATAAGAATTGGGGGAAATATTAGTGTAAACATGGAGGACATGCCAGAGGATATAACAGGGGCCTTTCAATCTATGATGGAAATGTTATCTGGGGCTGCACCCCCCGGGCAACCGCAAGATCAAATGAATGGAAGAGCAGCACCAAACTAA >Glyma14g23650.3 sequence type=CDS gene model=Glyma14g23650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGGCACTGCCATCTGAATGCAAGCAACACCTTTGGCAACATGCGTGGAACGTTAGAGGACCCAACTCTAATCTGGTTTGGTGGGCTGTATGGGCCTCAGTAGTTTGGGAGATTTGGAAGCAAAGAAACAATATCATCTTCAACCAGGGACACTGGGATTTGGACTCGGTTATGGATGCTATTCAGTACAGGGTCTGGAGCTGCTGTAAGGAAATGGAAAGATGTGATTGTCACCAATTTAGTTTGAAGAATTTGGCTGAATCACTAAAAACACTAGGTAACAAGGCAATGCAATCTAAGAAATACTCTGATGCAATTGAGTTGTATAATTGTGCCATTGCAGTCCATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCTTACACTCAGATTAACAAATATACAGAAGCAATCCAAGATTGTCTTAGATCCATTGAGATTGATCCAAACTATACCAAGGCATACAGTCGTCTGGGTTTGGTTTATTATGCACAAGGAAATTACAGAGATGCTATTCATAAAGGCTTTAGAAAAGCCTTGCAGTTGGATCCCAATAATGAGTCTGTCAAAGAAAATATACGGGTGGCTGAGCGTAAATTACTAGAAGAGCAACACCGTGCATATCCCAACCAGAATACAAGATCATCTCAAGAATTCCCAAACCAATCTGCACAAGGAGGATCAAGAAGCCATGGCGAGCCACCTCCATTTTCCTCTATGCCGTTTAACCCCCGTGATATTGCAAGCATGTTCATGAACTTCACGAACGCTACAAATGCACAGCAGCAGGGGTCACATTCTCAGGAAAGGCAAGAAGATAGCAATGGTAGTGGAGCTAGTGAGCCTGAAATAAGAATTGGGGGAAATATTAGTGTAAACATGGAGGACATGCCAGAGGATATAACAGGGGCCTTTCAATCTATGATGGAAATGTTATCTGGGGCTGCACCCCCCGGGCAACCGCAAGATCAAATGAATGGAAGAGCAGCACCAAACTAA
>Glyma14g23650.2 sequence type=predicted peptide gene model=Glyma14g23650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAHNHIATDSPLSRRIVRAFLYFLNSVEPGPGVDAEGIEVARECLAEAFKLNSSPVAGDDVKSDSLIDIFKSLEANKQCETSKSDVGPLPDSADASSSFLGENPARGKNHSEASKSTDEDSTQGPHAFVSKDELCGQFFAALEKNHYFWSNTDGSDDPGQLEKASCLFDEACMEMERCDCHQFSLKNLAESLKTLGNKAMQSKKYSDAIELYNCAIAVHEKSAVYYCNRAAAYTQINKYTEAIQDCLRSIEIDPNYTKAYSRLGLVYYAQGNYRDAIHKGFRKALQLDPNNESVKENIRVAERKLLEEQHRAYPNQNTRSSQEFPNQSAQGGSRSHGEPPPFSSMPFNPRDIASMFMNFTNATNAQQQGSHSQERQEDSNGSGASEPEIRIGGNISVNMEDMPEDITGAFQSMMEMLSGAAPPGQPQDQMNGRAAPN* >Glyma14g23650.3 sequence type=predicted peptide gene model=Glyma14g23650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRALPSECKQHLWQHAWNVRGPNSNLVWWAVWASVVWEIWKQRNNIIFNQGHWDLDSVMDAIQYRVWSCCKEMERCDCHQFSLKNLAESLKTLGNKAMQSKKYSDAIELYNCAIAVHEKSAVYYCNRAAAYTQINKYTEAIQDCLRSIEIDPNYTKAYSRLGLVYYAQGNYRDAIHKGFRKALQLDPNNESVKENIRVAERKLLEEQHRAYPNQNTRSSQEFPNQSAQGGSRSHGEPPPFSSMPFNPRDIASMFMNFTNATNAQQQGSHSQERQEDSNGSGASEPEIRIGGNISVNMEDMPEDITGAFQSMMEMLSGAAPPGQPQDQMNGRAAPN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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