Glyma14g22970 - SoyBase

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Report for Sequence Feature Glyma14g22970

Feature Type:	gene_model
Chromosome:	Gm14
Start:	27292238
stop:	27293813
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g22970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21910	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr1:7696655-7697347 FORWARD LENGTH=230	SoyBase	E_val: 2.00E-46	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0034605	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to heat	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0071497	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to freezing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_C9WA62	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP2 domain-containing transcription factor 4 n=1 Tax=Glycine max RepID=C9WA62_SOYBN	SoyBase	E_val: 7.00E-178	ISS
UniRef100_C9WA62	UniRef	Annotation by Michelle Graham. Best UniRef hit: AP2 domain-containing transcription factor 4 n=1 Tax=Glycine max RepID=C9WA62_SOYBN	SoyBase	E_val: 7.00E-178	ISS

Expression Patterns of Glyma14g22970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g22970 not represented in the dataset	Glyma14g22970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g22970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g147500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g22970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g22970

Limit To All Plant Sequences

>Glyma14g22970.2   sequence type=CDS   gene model=Glyma14g22970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAAGTCAGAGAACAAGATCCACCCAGAACAACCATCATCATCATCATCAAAGCCAATGAGACCATTATCATCATCAAGTGACAACAAGAAGAAGAAGTACAAGGGGGTGAGAATGAGAAGCTGGGGGTCATGGGTGTCAGAGATTAGAGCACCAAACCAAAAGACAAGGATATGGTTGGGATCTTATTCAACTGCTGAAGCAGCAGCAAGAGCCTATGATGCTGCACTTCTATGCCTCAAAGGCTCCTCAGCCAATCTCAACTTCCCTTCTTCAAGCTCCTCCTCACAACACTATATCATCCCTCAAGACACTGCCATGATGTCCCCAAAATCAATCCAAAGAGTTGCTGCTGCTGCTGCCAACAATTTCTTGGACAATAATGCTATTGCTATTAATAATGCTACCACCCCACCTTCTCCTCCTCTTGCTTCAACCTCTTCTTCATTTGTATCGTCACCATCAATGTCATCATCATCTCCTTTAGACCAAATTGATGATGATGTCTCTCTTCTGACACCATTTGGGGCCTACACTACTACTACTGCTACTACTATCTGTGACGAAACAAATGAATCAATGGCCATGATGGAATCTTGGTATGACTTGGAGGGGTTGCAATCCCCAAAGTATGTTGATCAAATGCTAAGTGGGGCATTCTTTGACATTGATTCAACACAGTTGCTTGATGATCTGTATGAAGAAAGTGACATTCGCTTGTGGAGTTTCTGCTGA

Predicted protein sequences of Glyma14g22970

Limit To All Plant Sequences

>Glyma14g22970.2   sequence type=predicted peptide   gene model=Glyma14g22970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKSENKIHPEQPSSSSSKPMRPLSSSSDNKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPSSSSSSQHYIIPQDTAMMSPKSIQRVAAAAANNFLDNNAIAINNATTPPSPPLASTSSSFVSSPSMSSSSPLDQIDDDVSLLTPFGAYTTTTATTICDETNESMAMMESWYDLEGLQSPKYVDQMLSGAFFDIDSTQLLDDLYEESDIRLWSFC*

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