SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20030 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr2:8647813-8648985 FORWARD LENGTH=390 | SoyBase | E_val: 8.00E-74 | ISS |
| GO:0010043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to zinc ion | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR14155 | Panther | RING FINGER PROTEIN 6/12/38 | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_B9RS17 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RS17_RICCO | SoyBase | E_val: 2.00E-99 | ISS |
| UniRef100_I1MA11 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MA11_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g22800 not represented in the dataset |
Glyma14g22800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g146700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g22800.2 sequence type=CDS gene model=Glyma14g22800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAATTGCAACATCATCTGTAACTATCCTTTCAAGAACCATTTACCAGTGTTCATCAACATGATGGTTCTTTCTTTCATTTCTAATGTTCAAGCCCAAGACAGTACTGACACAGATACCTTGCCTGCTGATTTTCCCCAACCAGTGCGTCCAAGCAAGGTGGTTGTAATAGTGGCTCTCTCAATATTGTTCACTTTCTCATTTCTCTTACTTCTCTACATAAGGTTCCGTAGAATCACCCCTCTTGAACTCATCCAAAGAAGTAGCCATCACTCTCCAAATTTTCAAGCAACAACTCGATCGAATTCGAGGTCACGGCTTTCTGGGATAGACAGACAAGTGATTGAAGCACTTCCATTTTTCAGGTTCTCTTCCCTCAAGGGGTCCAAACAAGGCCTAGAGTGTACGGTTTGCTTGTCACAGTTTGAGGACACAGAGATTCTTAGGCTCTTGCCAAAGTGCAAACATACTTTCCACATGAATTGCATTGACAAGTGGCTTGAAAGTCACTCTAGTTGCCCTCTTTGCAGGAACAGTATCGACCCTTTAGACATCAAGAACTTCACCTACTCAATCAGTTCAAGGTCCCTAAGAGTTCCTTCGAATTTAACCGAGGACACTAACCTTGAAATCTTTGTTCACAGGGAATCATCATCAAGGTTTAACATGGGAAGCAGGTTTTGGAATTTGGGAAGGAACAACAAAGAAGAACGTCTCCTTGATCAACAGGTTGATGGCAAACACATGCATAAGTTCAATCACAAAATCGTGGTCTCTGATGTTGTTACAAGGAGCAGGTGGAGTGATCTAAACTCTTCGGACATGTTATCATTGAACAGTGAGATGCTTCTTGACATGTCAAGCAGAAGATTCTCTCCCTCTAATGAAATGATTCGTGGAGATTCAAGCCTTCCCTTTATTTTCAATGATGATGAAAGTTCATTTACGTTATTGAATACTGCTGAGAAGAGATCTATGTCTGAGATTGCTCGTGTTCCTAGGTTCATAGAAACGTGCAAGCAGAATAGAACGGAAGCAGGTGTGGCATCAAGTGGGAGCAACGAGAGGGAGGAGAGGTTGAGGAGGATTTGGTTGGGAATTGCTCAACGAACAGTGCAATGGTTTGTGGGACAAGAAAGAAACTCGAGAGAATTAAAGCACAAAAATTTAACTCCAAATGTTTGA
>Glyma14g22800.2 sequence type=predicted peptide gene model=Glyma14g22800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANCNIICNYPFKNHLPVFINMMVLSFISNVQAQDSTDTDTLPADFPQPVRPSKVVVIVALSILFTFSFLLLLYIRFRRITPLELIQRSSHHSPNFQATTRSNSRSRLSGIDRQVIEALPFFRFSSLKGSKQGLECTVCLSQFEDTEILRLLPKCKHTFHMNCIDKWLESHSSCPLCRNSIDPLDIKNFTYSISSRSLRVPSNLTEDTNLEIFVHRESSSRFNMGSRFWNLGRNNKEERLLDQQVDGKHMHKFNHKIVVSDVVTRSRWSDLNSSDMLSLNSEMLLDMSSRRFSPSNEMIRGDSSLPFIFNDDESSFTLLNTAEKRSMSEIARVPRFIETCKQNRTEAGVASSGSNEREERLRRIWLGIAQRTVQWFVGQERNSRELKHKNLTPNV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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