SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G60080 | AT | Annotation by Michelle Graham. TAIR10: 3'-5'-exoribonuclease family protein | chr1:22152605-22154339 REVERSE LENGTH=302 | SoyBase | E_val: 8.00E-147 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0042991 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000175 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3'-5'-exoribonuclease activity | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG1613 | KOG | Exosomal 3'-5' exoribonuclease complex, subunit Rrp43 | JGI | ISS | |
| PTHR11097 | Panther | EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN) | JGI | ISS | |
| PTHR11097:SF9 | Panther | EXOSOME COMPLEX EXONUCLEASE RRP43 (RIBOSOMAL RNA PROCESSING PROTEIN 43) | JGI | ISS | |
| PF01138 | PFAM | 3' exoribonuclease family, domain 1 | JGI | ISS | |
| UniRef100_B9T1F1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Exosome complex exonuclease rrp43, putative n=1 Tax=Ricinus communis RepID=B9T1F1_RICCO | SoyBase | E_val: 2.00E-166 | ISS |
| UniRef100_I1MA04 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MA04_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g22250 not represented in the dataset |
Glyma14g22250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g145600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g22250.2 sequence type=transcript gene model=Glyma14g22250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTAGTACTGGTGAACCTATATTTGTTGTTCGCGTTTTGAAGTTCTCTTTCGCGACACAGGAAAGAAAGATCGAGGTTTCTCTTCACTCATCCTTCGCCCTAGCTGCGTATCCCTACCACCGTTCTAGACAGGACCTACAAACATAGAAAATAGATGGGATTGTCGAATGCTTCTGAGGATTTGTCATCAGAGATGGAGGTTGATGCCTTTAGACGCCTTTTTCCACTTCGATATTTTGAGCGTCATCTTGCTGAATCTATAAGGCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACTACTATGTTGACTGCTATTAAAATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAGCTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATTGTTAGGCCTGGCAGGCCTGCTGAAGCATCACCGGTGGTATCAAAGCAGTTGTCTGACACCATTTCAAGTTCTAGAATGATTGATTTGAAAGAATTGTCCTTGGTTGGTGGAAAAGCTGCATGGATGGCTTACCTGGATATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTTGCAAATTCCTGCTGTTGCCATGAATGATGATGGCAAAATAGTACTCGTGTCTGGCGAAGATGGACAAAAGCCAGTCAATAAGGAGAAGAGGAAGCTTACATTAAGAAGCATTCCATTCTCATTAACATGCATACTTCACAAGAATTACATCTTGGCAGATCCTACTGCTGAAGAAGAATCTATTATGGAAACCCATGTGACAATAGTTTTGGATACATCCGGTCAACTAATATCTCTTTACAAGCCTGGTGGGCCAGCTCTTGCCTATACTTCTGCTATCCAGGATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTAGACAAAGAAAATTCTGCTATGGAGGTGGTGGTTTGAGTAGAATTATTAATTACACAGTAATCTTTTTTGTCCTGAATGGTTGTTTAAATTATTATAGTATTTGTACATTCAGGAATCAGGATCACAGGTACTGTGGCCTTTCACTATAAAAGAAATTATTTTACGAATTTATTCCATCTATTGGAACATTAATTTGTTGTCATTTCGGCATTTGATTTCACATATATGGCGGATGGTTTTTGGGATATAATTCTGTTCAAAAA
>Glyma14g22250.1 sequence type=CDS gene model=Glyma14g22250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGATTGTCGAATGCTTCTGAGGATTTGTCATCAGAGATGGAGGTTGATGCCTTTAGACGCCTTTTTCCACTTCGATATTTTGAGCGTCATCTTGCTGAATCTATAAGGCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACTACTATGTTGACTGCTATTAAAATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAGCTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATTGTTAGGCCTGGCAGGCCTGCTGAAGCATCACCGGTGGTATCAAAGCAGTTGTCTGACACCATTTCAAGTTCTAGAATGATTGATTTGAAAGAATTGTCCTTGGTTGGTGGAAAAGCTGCATGGATGGCTTACCTGAATGCTGCCTTCTCTATCATGCAGGATATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTTGCAAATTCCTGCTGTTGCCATGAATGATGATGGCAAAATAGTACTCGTGTCTGGCGAAGATGGACAAAAGCCAGTCAATAAGGAGAAGAGGAAGCTTACATTAAGAAGCATTCCATTCTCATTAACATGCATACTTCACAAGAATTACATCTTGGCAGATCCTACTGCTGAAGAAGAATCTATTATGGAAACCCATGTGACAATAGTTTTGGATACATCCGGTCAACTAATATCTCTTTACAAGCCTGGTGGGCCAGCTCTTGCCTATACTTCTGCTATCCAGGATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTAGACAAAGAAAATTCTGCTATGGAGGTGGTGGTTTGA >Glyma14g22250.2 sequence type=CDS gene model=Glyma14g22250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGATTGTCGAATGCTTCTGAGGATTTGTCATCAGAGATGGAGGTTGATGCCTTTAGACGCCTTTTTCCACTTCGATATTTTGAGCGTCATCTTGCTGAATCTATAAGGCCAGATGGTAGACCACTTGGAAAAGCTAGAGAAACAAGTATTTTTCTTGGTGCTGTTGCGTCTGCTAATGGGTCGGCTCTTGTGAAGATTGGATCAACTACTATGTTGACTGCTATTAAAATGGAAGTCATGACTCCCTCCTTGGAGTCTCCAGATGAGGGCTGTCTAGCTATTGATTTCCACATGCCTCCAATTTGTTCTCCGATTGTTAGGCCTGGCAGGCCTGCTGAAGCATCACCGGTGGTATCAAAGCAGTTGTCTGACACCATTTCAAGTTCTAGAATGATTGATTTGAAAGAATTGTCCTTGGTTGGTGGAAAAGCTGCATGGATGGCTTACCTGGATATCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCATTAATTTCTGCAGTTGCTGCCTTATCTCATTTGCAAATTCCTGCTGTTGCCATGAATGATGATGGCAAAATAGTACTCGTGTCTGGCGAAGATGGACAAAAGCCAGTCAATAAGGAGAAGAGGAAGCTTACATTAAGAAGCATTCCATTCTCATTAACATGCATACTTCACAAGAATTACATCTTGGCAGATCCTACTGCTGAAGAAGAATCTATTATGGAAACCCATGTGACAATAGTTTTGGATACATCCGGTCAACTAATATCTCTTTACAAGCCTGGTGGGCCAGCTCTTGCCTATACTTCTGCTATCCAGGATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTAGACAAAGAAAATTCTGCTATGGAGGTGGTGGTTTGA
>Glyma14g22250.1 sequence type=predicted peptide gene model=Glyma14g22250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLSNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDGRPLGKARETSIFLGAVASANGSALVKIGSTTMLTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSRMIDLKELSLVGGKAAWMAYLNAAFSIMQDIYCLDADGALFDAALISAVAALSHLQIPAVAMNDDGKIVLVSGEDGQKPVNKEKRKLTLRSIPFSLTCILHKNYILADPTAEEESIMETHVTIVLDTSGQLISLYKPGGPALAYTSAIQDCVGLTGQRVKELKSYLDKENSAMEVVV* >Glyma14g22250.2 sequence type=predicted peptide gene model=Glyma14g22250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLSNASEDLSSEMEVDAFRRLFPLRYFERHLAESIRPDGRPLGKARETSIFLGAVASANGSALVKIGSTTMLTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSRMIDLKELSLVGGKAAWMAYLDIYCLDADGALFDAALISAVAALSHLQIPAVAMNDDGKIVLVSGEDGQKPVNKEKRKLTLRSIPFSLTCILHKNYILADPTAEEESIMETHVTIVLDTSGQLISLYKPGGPALAYTSAIQDCVGLTGQRVKELKSYLDKENSAMEVVV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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