SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G25870 | AT | Annotation by Michelle Graham. TAIR10: haloacid dehalogenase-like hydrolase family protein | chr2:11031159-11034302 FORWARD LENGTH=584 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0016311 | GO-bp | Annotation by Michelle Graham. GO Biological Process: dephosphorylation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004222 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0016791 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatase activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| PTHR10000 | Panther | PHOSPHOSERINE PHOSPHATASE | JGI | ISS | |
| PF02130 | PFAM | Uncharacterized protein family UPF0054 | JGI | ISS | |
| PF08282 | PFAM | haloacid dehalogenase-like hydrolase | JGI | ISS | |
| UniRef100_B9RS16 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatase yidA, putative n=1 Tax=Ricinus communis RepID=B9RS16_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M9Z5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9Z5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g21790 not represented in the dataset |
Glyma14g21790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g144100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g21790.1 sequence type=CDS gene model=Glyma14g21790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCTTCCCCGTTTCTCCTACCTTCTCCGCCACCCTCCTCCTCTCCACGCCATGGCGCGTGCCGTCACGTGCGCCACTCAGCCCTCTCATTTCCACGCCTCGCTCGGCATCGCCACCTCTCGCCACCCCGTCTCTCTGCCCTCCAAATCCTCGCTTTTCTGCCGCACCTTTCACGCCCTCGCGCGGTGCCAGAGCGAAGAGATGACGCGGCGGCGCGTGGCTGGAGTCCGCGCCGGGCAGAGGGAGTACAGGAAGGCGAGGAGAAGAGCGCCGCCCAAGAGCAAAGGCAAGGAGCTGCAACTCTGTGTCGACATTTGCATCGAAGAAGATTTGCCTGACGATCCTGAAATTTTGAGCATTGCAGAGTTGCTTCGACTAAATGTTCCAATGGCGATGAAACTAGTGTTTGATGGTTTGAAAGGTTCGAGGTATAAAACACGAGACACTGCTATAAGTGATGTTGGTGGGTTTGATAGTGTTGAGTTATCGGTACTTCTTTGTAATGATGAGTTTATACGAAAACTTAATAAGGAGTGGAGAAATGAAGATCGTGCCACTGATGTTCTCTCAATGTCACAACATGTACCTGGGCTGAAGATTCCTATTCTTATGTTGGGTGATGTTGTAATTTCTGTTGAGACAGCGGCAAGACAAGCAGAGGAAAGAGGGCATACTCTTCTTGATGAGATCCGAATCCTCATGGTTCATGGCTTGTTACATCTTTTGGGATTTGATCATGAAATAAGTGAAGAGGCTGAAGTAGAAATGGAAAGAGAGGAGGAAATCCTTTTAAAGAGTCTTGATTGGAAAGGAAAAGGGCTAATAAGGAGTGCATTTGATGCTGAAACAAATTCAAATTTTCACCAAGACAGTGCAGATGACAGGAAGAAAGAAGGCAGTCTTAGATTTTACAAACCAAAGTTCAGATATATCTTCTGTGATATGGATGGAACATTGCTGAACAGCAAAAGTCAAATTTCTTCTACAACTGCCAATGCTTTGAGAGAGGCGTCATCCAGGGGTGTGAAAATTGTGATAGCTACTGGAAAAGCTCGTCCAGCTGTGATAGACATTTTTAAGATGGTAGATTTAGCTGGAAAAGATGGCATTGTTTCAGAATTTTCTCCTGGGGTTTTCTTACAGGGATTGCTTGTTTATGGTAGACAAGGTCAAGAAATATTTAGGAGCAACTTAGATCAAAATGTCTGTAGAGAGGCTTGTCTTTACTCTTTGGAGAATAAGGTTCCACTTATTGCATTTTGTGAAGGGCGCTGCTTAACCCTATTTCGTGATCCACTAGTTGATTCGCTACATACAATATACCATGAACCAAAGGCTGAGGTCATGCCTTCTGTTGAACATCTATTGGCTTCTGCTGACATACAGAAAATGATTTTCTTGGACACTGACCGGAGGGTGGCTGATACCTTGCGTCCGTACTGGTCTGATGCAACAAATGGTCGTGCCTCTGTTGTTCAAGCTGTGCCAGACATGCTGGAAATTGTACCCGTGGGAACATCGAAAGGGAATGGAGTAAAAGTGCTGCTAGATCATTTTGAGGTTACTGCTAAGGAGATAATGGCTATTGGTGATGGGGAAAATGATGTGGAGATGCTTGAATTGGCTTCTCTAGGCATCGCACTTAGTAATGGATCAGAGAAGACCAAATCTGTTGCTAACGTAATTGGTTTGAGCAATGATGAAGATGGTGCAGCAGATGCCATCTACCGGTATGCATTCTGA
>Glyma14g21790.1 sequence type=predicted peptide gene model=Glyma14g21790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLLPRFSYLLRHPPPLHAMARAVTCATQPSHFHASLGIATSRHPVSLPSKSSLFCRTFHALARCQSEEMTRRRVAGVRAGQREYRKARRRAPPKSKGKELQLCVDICIEEDLPDDPEILSIAELLRLNVPMAMKLVFDGLKGSRYKTRDTAISDVGGFDSVELSVLLCNDEFIRKLNKEWRNEDRATDVLSMSQHVPGLKIPILMLGDVVISVETAARQAEERGHTLLDEIRILMVHGLLHLLGFDHEISEEAEVEMEREEEILLKSLDWKGKGLIRSAFDAETNSNFHQDSADDRKKEGSLRFYKPKFRYIFCDMDGTLLNSKSQISSTTANALREASSRGVKIVIATGKARPAVIDIFKMVDLAGKDGIVSEFSPGVFLQGLLVYGRQGQEIFRSNLDQNVCREACLYSLENKVPLIAFCEGRCLTLFRDPLVDSLHTIYHEPKAEVMPSVEHLLASADIQKMIFLDTDRRVADTLRPYWSDATNGRASVVQAVPDMLEIVPVGTSKGNGVKVLLDHFEVTAKEIMAIGDGENDVEMLELASLGIALSNGSEKTKSVANVIGLSNDEDGAADAIYRYAF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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