Glyma14g21171 - SoyBase

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Report for Sequence Feature Glyma14g21171

Feature Type:	gene_model
Chromosome:	Gm14
Start:	24462688
stop:	24472792
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g21171

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25752	AT	Annotation by Michelle Graham. TAIR10: rhomboid-like protein 11 \| chr5:8951503-8953323 REVERSE LENGTH=280	SoyBase	E_val: 4.00E-14	ISS
GO:0080140	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of jasmonic acid metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009706	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
UniRef100_C6T841	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T841_SOYBN	SoyBase	E_val: 6.00E-17	ISS
UniRef100_D7M4K1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rhomboid family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M4K1_ARALL	SoyBase	E_val: 3.00E-13	ISS

Expression Patterns of Glyma14g21171

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g21171 not represented in the dataset	Glyma14g21171 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g21171 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g142000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g21171

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g21171

Limit To All Plant Sequences

>Glyma14g21171.1   sequence type=CDS   gene model=Glyma14g21171   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCAACTCAGCATCATCCCTTATCTACGCTTCGATCCCGCACTCTCGCACCCTCCTGCATCTCCAACAAATCAGTGCTTTTATGTTAGATATAATGTCGCAGTTGGAGCTTGGGAAGCCGGAGCCAAATGGAAAACCGGAGAAACGAGTCAATGGTATATTCTGGATCATTCTCCTCAACATTGGCATATCCGTAGCTGACCACTTTTTTCAGCTTTCACTGCTGCTAGGCACTGCTTTGGCTGGATCATCCAATCATAATATGTGGCCCCGAACTTTTCCGGTTTTGCTCTCATCCAGGCCCATGATATGA

Predicted protein sequences of Glyma14g21171

Limit To All Plant Sequences

>Glyma14g21171.1   sequence type=predicted peptide   gene model=Glyma14g21171   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPNSASSLIYASIPHSRTLLHLQQISAFMLDIMSQLELGKPEPNGKPEKRVNGIFWIILLNIGISVADHFFQLSLLLGTALAGSSNHNMWPRTFPVLLSSRPMI*

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