SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G32700 | AT | Annotation by Michelle Graham. TAIR10: helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding | chr4:15767440-15779185 FORWARD LENGTH=2154 | SoyBase | E_val: 0 | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0010468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of gene expression | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| KOG0950 | KOG | DNA polymerase theta/eta, DEAD-box superfamily | JGI | ISS | |
| PTHR11752 | Panther | HELICASE SKI2W | JGI | ISS | |
| PTHR11752:SF3 | Panther | DNA HELICASE-RELATED | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| PF00476 | PFAM | DNA polymerase family A | JGI | ISS | |
| UniRef100_B9RS63 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase theta, putative n=1 Tax=Ricinus communis RepID=B9RS63_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233ACEE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233ACEE related cluster n=1 Tax=unknown RepID=UPI000233ACEE | SoyBase | E_val: 0 | ISS |
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Glyma14g20430 not represented in the dataset |
Glyma14g20430 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g140800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g20430.2 sequence type=CDS gene model=Glyma14g20430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTCCTTCGCATCGCTCTCGCATCGATCAGTTTTACGCTTCGAAGAAGAGGAAAGCAGCGTCGCCTGTTCCTAAAGCCGGGAGATTCGAAAAAGGTGCGAGGCATGGGGCTGATGAGTCTCCGAGTGCCAAAGGCACTTTGGAGGGTTACTTGGTTTCGTCACAGGACGGTGGTGGTGACGGCTGCGGTGACGCAAACACTGTTAAGGTTAAGAGAAACTTGACATCGGAGATTGGTGGTTCTCTTGACAATGAGCTTAATAAGCATACTGTTTCATTGGGTCAAGGGTGTGGAGATTCTCAATCTATTCAGCCGAGTGAAATTGGACAGGGTGTGGCGAAATCGGAGAGGAAACAGTTTGCTGCTGACTTTTTGTCTTTGTATTGCAGTGTATTGCATCCGAGTGTGGGTTTGCCGTTGGAGATGAAAATGGATGATCACAAGAGACATGGTTCACCAACATTAGTAGAGGGAAATAGTGTTTTACTGCGGAAGAATAATGACACTGCTGGTGAGCTATGTTTCGGTGGTGAAAATACATTGTTGAGTGTGAAGATCGATGAAGACATCAAGTCTGGTGTTGTTGGTAATAATAATTCTATGGGATGTGTTCCTGGCTCTTGTACGAAGGTTTCTGGTGGTGGTGATACTACTGGCTTTGAGACAGGCTTTAGGAAATGTAATAATACACCTAAACCATCAATGAAATTGGCTGAATACTACAACACACCGGGGTCTTTGATTGTTAAAGCAAGTGTTAGGGAGACTCCAAAGTCAACACGCGGCAGCTCATCATTTTCGCCTGGAGAGGCATTTTGGAATGAGGCAATTCAACTTGCTGATGGTTTGTGTGTTCCCATGGGTAATGATCCTTCTAAGGTTATGGGAGAAAGTAATGTGGTGGAAGAGGAACCTGAGATGAAGAACTCATGCAATTTACAAAATTATGATGGCAAACCAAGGAAAATATTGGATCAAAGTAAAAACAGAATCCGGAATAGGGAAATGGGTGCTCCTTTAGGGTTAGTTGGGATGCACACTAAAGATTCTGTGAAAGAAGCATCCAGCCTTCCTGTTAAACATTTTGATTTTTCGTTTGAGGACAACAATTTGGAAGAAAATACCTTGCAAGACTGTCGTGTTGGTGATTCAATCAATGTTACTTGTGTGGCTGGTAAACAGTATGATTCATGTTCTATGATAGGTCATACATATGAAAAGATGAATGAAGTGCAAGAGAATACTTTAGTAGATACATTAGGCAAAAGGGTTTGTCAGGATAATGTTAGCATGACATCTAATTCACCCCACAATGAGGTCAGGACACCGATTAGTGCACATGCATCTGATGAAGCCAGTACTCCTTCAACTAGTGTATCACTTAATGATCATTTTGACCTAAACAGCTGGCTTCCTCCTGAAATATGCAGCATATATAGAAAGAAAGGAATCTCAAGACTTTACAGTTGGCAGGTTGATTGCCTTCGAGTGGATGGTGTCCTACAGAGAAGAAATCTTGTATATTGTGCTTCTACAAGTGCTGGTAAGAGTTTTGTTGCTGAGATTTTAATGCTGCGGAGGGTGATAATAACTGGAAAAATGGCACTACTTGTTCTTCCGTATGTATCAATTTGTGCAGAAAAGGCTGAACACCTCGAACGTCTCCTTGATCCACTTGGTAAACATGTTCGTAGTTATTATGGAAACCAAGGTGGTGGAACACTTCCTAAAGATACTTCTGTAGCTGTCTGCACTATAGAGAAGGCAAACTCACTAGTTAATAGATTATTGGAAGAGGGGCGTCTATCAGAAATGGGAATTATCGTAATTGATGAACTGCATATGGTTGGTGATCCAAGAAGAGGTTATCTACTTGAACTTATGTTGACAAAGCTTCGTTATGCAGCAGGGGAAGGTATTCCAAAATCAAGTGATGGAGAAAGTTCCGGTGGAAGCAGTGATAAGGCTGATCCTGCCCAAGGTCTGCAAATTGTCGGAATGAGTGCAACAATGCCAAATGTTGCAGCAGTTGCTGACTGGCTTCAAGCAGCACTATACCAGACCGAGTTCCGGCCAGTTCCTCTAGAAGAATATATAAAAGTTGGTAATTCCATTTACAACAAAAGTATGGAACTTTGTAGAATAATCTCAAAAGCGGCTGAACTTGGTGGTAAAGATCCAGATCATGTTGTTGAACTATGTAATGAGGTTGTTCAAGAGGGACACTCAGTTTTAATATTTTGCTCTAGCCGGAAGGGTTGTGAGTCAACTGCAAGGCACATTGCAAAGTTCCTTAAAAGCTTTACTGTTGATGCTAATGATTGTGAGTTTGCCGATATTACTTCTGCTATTAACTCCTTGGGAAAGTGCCCTGCTGGGTTGGACCCCATATTACAGGAAACTCTTCCTTCTGGTGTTGCATTTCACCATGCTGGCCTTACGGTTGAGGAACGAGAGATTGTTGAAACCTGTTATCGGAAGGGCCTTTTACGTGTCTTAACTGCCACGTCAACCTTAGCAGCTGGGGTAAATCTGCCAGCTAGGAGGGTAATTTTCCGCCAACCTAGAATTGGTTGTGATTTTCTAGATGGGACGAGGTACAAACAGATGGCTGGTCGTGCTGGTCGAACTGGAATTGATACAAAAGGAGAAAGTATACTTATCTGTAAACCAGAAGAACTAAAAAAGGTTTCGGGACTGCTTAATGAAAGCTGTCCTCCATTACATTCCTGTTTGTCCGAAGACATGAATGGAATGACTCATGCAATCTTAGAAGTAGTGGCTGGAGGAATTGTTCAAACTGCTAGCGATATTAACCGGTATGTTAGATGTACCCTTTTAAATTCTACAAAACCATTTCTAGACGTGGTGAAATCTGCACAAGAATCCCTTCGATGGTTGTGCCAAAGAAAATTTCTTGAATGGAATGAAGACACTAAACTCTACAGTACCACACCTCTTGGACGTGCATCTTTTGGCAGTTCTCTTTGTCCACAAGAGTCACTTATTGTGTTAGCTGATCTTTCAAGGGCAAGGGAAGGATTTGTCCTTGCATCTGACTTGCATTTAGTTTACTTGGTGACACCAATCAATGTAGATGTTGAGCCAGATTGGGAATTGTACTATGAGCATTTTGTGAAATTGTCTCTGCTTGACCAGTCAGTTGGCAATCGAGTAGGTGTGACAGAACCATTCTTGATGTATATGGCACATGGTGCACCACTACGTGCTTCAAACAAGTCAAGAGATAATACAAGATCATTGCACAATCAACGAAGAAATCAACTTGGGATTTCCAGTGCAACAGCTAACTATGATGATCAAACACTTCGTGTCTGTAGAAGATTCTATGTTGCTCTCATTTTGTCACTTCTAGTTCAGGAAATTCCTGTGGGTGAGGTTTGTGAAGCATTCAAAGTTGCCAGGGGAATGGTTCAAGCCTTGCAAGAGAATGCTGGTAGGTTTGCATCTATGGTTGCTGTGTTTTGTGAGCGACTTGGGTGGCATGATCTTGAAGGCTTAGTTGCTAAGTTTCAAAACCGTGTATCATTTGGAGTTAGAGCAGAGATTGTAGAACTTACCACTATTCCCTATGTTAAAGGTTCTCGAGCCAGATCACTCTATAAAGCTGGTTTACGTACACCCCATGCAATTGCTGAGGCATCCATTCCTGAGATAGTAAAAGCACTTTTTGAATCTTCATCATGGGCCACAGAAGGTTCTGCACAAAGGGGATTTCAATTTGGTATAGCAAAAAAGATAAAGAATGGTGCCCGCAAGATTGTTTTTGATAAAGCTGAGGAGGCAAGTAACGCTGCTTTCTCAGCCTTTAAATCACTTGGGTTCAATGTCCCACAGTTTGATCCTCAAATATTATCTACTGCTGCTCGTGATTCTATCAGGCTAGGAACTGGAAGTACCTCTGGAAGTGACACAACTGATACTAGTCATAGTTTTGTTAATGCAGATTGCATTGATAATACTAATAAATTTACTTTAGATAAAGAAAAAGAAGACTTAATAAAATTATCTGTTAACGGTACTGTGGCTTCTGTAGAAGGAAAATCAAGAAGCAGGATGATATGTAGCTTGTCCAGTGTTCCAGTTGCAGGACCTAAAATGGATGAACTCAATAGGACTTCTGACCATACCAAAAATGCAGACATGACCATTCTCTCTGTTCAATTGCAGAAACCAAATGATAAATCTGGTGTACATGATGGGTGCGATGCTCATTGTACAGAGGAAGCGCATAAGAATGGAAATTTGGCTAGTGGTAATGCTGGTAGTTCCAGCCAGAAAGGTCCCATTAATGCAGTTAGTAGTCCTGGTGGGCTTGATTCATTTTTGGATCTATGGGACTCTATGCCAGAGTTCTATTTTGATATCCATTATATCAAACGATTGGAATTGCACTCTACTGCTCCCTTTGAAATACATGGCATAGCTGTTTGTTGGGAAAACTCTTCTGTGTACTACATTAATCTTCCCAGAGATATTCTGTTGTCTGACAGTATAAAAGATGGCTGTTTATCCTTGAGTGCATGCAGTCATAAGAAGAAAGTTTCATCTTCTAATTCTAAGCAAGATCTAGAGATTGCTAGATCTAGATGGAACAGAATTAGTAAAATAATAGGGAAAATAAATGTCAGAAAGTTCACCTGGAATTTGAAGATTCAGATGCAGGTGCTGAAAAGGCCAGCATTTTCAGTTCAGAGATTTGGTTGCTTGGACACACTTGGAAAAAGTATGGACCTTGAAGTTGTAGACAATTCTTATGTGTTATTGCCCCCTATACATGTTAAAGATGCAATTGATATGTGCATTGTGGCTTGGATTCTTTGGCCCGATGAAGAGAGTAGCTCTAGTCCAAACCTGGATAAGGAGGTAAAGAAGAGGTTATCCTCTGAGGATGCTGCAGTCGCCAATCAGAGTGGCAGGTGGAGGAATCAGATGCGAAGGGCTGCTCATAATGGTTGCTGCCGTCGGGTTGCTCAAATACGAGCATTAAGTTCTGTTCTTTGGAAATTACTTGTTTCTGAGAAACTTGTTGAAGTGCTTATGGATATAGAAATCCCATTGGTGAATGTTGTTGCTGACATGGAGCTTTGGGGAATTGGTGTTGATTTGGAGAGATGCATCCAGGCTCGTAAATTGTTGATTAAAAGGCTAAAGCATCTTGAGAAGGAAGCTTATAAACTGGCTGGAACGACATTTTCATTAAATATGCCAGCAGATATTGCAAGAGTGCTGTATGAACACTTGAAGCTGCCCATACCTGATGTGCGGAATAAGGGAAAGCAACATCCGAGTACTAGCAAGCACTGCTTGGATGCACTGAGGCATGAACATCCCATTGTTCCAGTCATTAAAGAACATCGAACAATGGCAAAGCTGTTGAACTCTACGTTAGGATCAATTTGTTCCCTGGCTAGGCTATCTGTAAGCACACAGAAGTATACATTACATGGTCATTGGCTCCAGACGTCCACGGCAACTGGTCGGCTTTCAATGGAGGAACCTAATCTTCAGTGTGTTGAGCATGCAGTAGAATTCAAAATGAAAGATGAAAATGAAGGTGATGCTGACGAGAGTTATTGTACAATTAATGCTCGTGATTTCTTTGTTCCTACTCAGGACAACTGGTTACTGTTAACAGCAGATTATTCTCAGATAGAATTGAGATTGATGGCTCACTTCTCTAAAGACTCTTCACTTGTTGAACTTCTCAGTAAGCCTGATGGTGATGTCTTTACAATGATAGCAGCAAGATGGACTGGGTGTCCTGAGGTTTCTGTGTGTTCTAAGGAGAGAGAGCAGACCAAAAGGATGGTGTATGGCATTCTTTATGGTATGGGGGTCAATAGCCTTGCAGAACAACTGGATTGCACTTCTGATGAAGCTGCTGAAAAGATTGCTAACTTCAAAAGCTCTTTTCCTGGTGTTTCTTCCTGGCTTCTTGAAGCCGTTGCGTCTTGTCGCAGTAAAGGATATGTTGAGACTCTTAAGGGAAGAAAAAGGTTTTTGTCAAAAATAAAATATGGCAGCAGTACAGAAAAATCAAAAGCTCAGAGGCAAGCTGTAAATTCCATTTGTCAGGGATCTGCGGCAGACATAATTAAGATTGCAATGTTAAGAATTTACTCTGCAATTGTCACTGGATTTGATAGTCCAGATTCCAGTTCTTCACTAGCAACCAAGTTTCACATGCTTAAAGATCGTTGCCGGATTCTGTTACAGGTACACGATGAATTAATGTTGGAAGTTGATCCTTCTGTGATAAAAGAAGCAGCCCTACTATTGCAGACAAGCATGGAGAATGCGGTCTCACTTCTTGTTCCTTTGCATGTCAAACTTAAGGTTGGAAGAACATGGGGATCTTTGGAGCCATATACATCCGATAAATTCAACAATGCCACTCTTGTGGCTGAATCCTGA
>Glyma14g20430.2 sequence type=predicted peptide gene model=Glyma14g20430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASPSHRSRIDQFYASKKRKAASPVPKAGRFEKGARHGADESPSAKGTLEGYLVSSQDGGGDGCGDANTVKVKRNLTSEIGGSLDNELNKHTVSLGQGCGDSQSIQPSEIGQGVAKSERKQFAADFLSLYCSVLHPSVGLPLEMKMDDHKRHGSPTLVEGNSVLLRKNNDTAGELCFGGENTLLSVKIDEDIKSGVVGNNNSMGCVPGSCTKVSGGGDTTGFETGFRKCNNTPKPSMKLAEYYNTPGSLIVKASVRETPKSTRGSSSFSPGEAFWNEAIQLADGLCVPMGNDPSKVMGESNVVEEEPEMKNSCNLQNYDGKPRKILDQSKNRIRNREMGAPLGLVGMHTKDSVKEASSLPVKHFDFSFEDNNLEENTLQDCRVGDSINVTCVAGKQYDSCSMIGHTYEKMNEVQENTLVDTLGKRVCQDNVSMTSNSPHNEVRTPISAHASDEASTPSTSVSLNDHFDLNSWLPPEICSIYRKKGISRLYSWQVDCLRVDGVLQRRNLVYCASTSAGKSFVAEILMLRRVIITGKMALLVLPYVSICAEKAEHLERLLDPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLVNRLLEEGRLSEMGIIVIDELHMVGDPRRGYLLELMLTKLRYAAGEGIPKSSDGESSGGSSDKADPAQGLQIVGMSATMPNVAAVADWLQAALYQTEFRPVPLEEYIKVGNSIYNKSMELCRIISKAAELGGKDPDHVVELCNEVVQEGHSVLIFCSSRKGCESTARHIAKFLKSFTVDANDCEFADITSAINSLGKCPAGLDPILQETLPSGVAFHHAGLTVEEREIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGCDFLDGTRYKQMAGRAGRTGIDTKGESILICKPEELKKVSGLLNESCPPLHSCLSEDMNGMTHAILEVVAGGIVQTASDINRYVRCTLLNSTKPFLDVVKSAQESLRWLCQRKFLEWNEDTKLYSTTPLGRASFGSSLCPQESLIVLADLSRAREGFVLASDLHLVYLVTPINVDVEPDWELYYEHFVKLSLLDQSVGNRVGVTEPFLMYMAHGAPLRASNKSRDNTRSLHNQRRNQLGISSATANYDDQTLRVCRRFYVALILSLLVQEIPVGEVCEAFKVARGMVQALQENAGRFASMVAVFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTTIPYVKGSRARSLYKAGLRTPHAIAEASIPEIVKALFESSSWATEGSAQRGFQFGIAKKIKNGARKIVFDKAEEASNAAFSAFKSLGFNVPQFDPQILSTAARDSIRLGTGSTSGSDTTDTSHSFVNADCIDNTNKFTLDKEKEDLIKLSVNGTVASVEGKSRSRMICSLSSVPVAGPKMDELNRTSDHTKNADMTILSVQLQKPNDKSGVHDGCDAHCTEEAHKNGNLASGNAGSSSQKGPINAVSSPGGLDSFLDLWDSMPEFYFDIHYIKRLELHSTAPFEIHGIAVCWENSSVYYINLPRDILLSDSIKDGCLSLSACSHKKKVSSSNSKQDLEIARSRWNRISKIIGKINVRKFTWNLKIQMQVLKRPAFSVQRFGCLDTLGKSMDLEVVDNSYVLLPPIHVKDAIDMCIVAWILWPDEESSSSPNLDKEVKKRLSSEDAAVANQSGRWRNQMRRAAHNGCCRRVAQIRALSSVLWKLLVSEKLVEVLMDIEIPLVNVVADMELWGIGVDLERCIQARKLLIKRLKHLEKEAYKLAGTTFSLNMPADIARVLYEHLKLPIPDVRNKGKQHPSTSKHCLDALRHEHPIVPVIKEHRTMAKLLNSTLGSICSLARLSVSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHAVEFKMKDENEGDADESYCTINARDFFVPTQDNWLLLTADYSQIELRLMAHFSKDSSLVELLSKPDGDVFTMIAARWTGCPEVSVCSKEREQTKRMVYGILYGMGVNSLAEQLDCTSDEAAEKIANFKSSFPGVSSWLLEAVASCRSKGYVETLKGRKRFLSKIKYGSSTEKSKAQRQAVNSICQGSAADIIKIAMLRIYSAIVTGFDSPDSSSSLATKFHMLKDRCRILLQVHDELMLEVDPSVIKEAALLLQTSMENAVSLLVPLHVKLKVGRTWGSLEPYTSDKFNNATLVAES*
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