Glyma14g20430 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma14g20430

Feature Type:	gene_model
Chromosome:	Gm14
Start:	23488744
stop:	23517275
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g20430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32700	AT	Annotation by Michelle Graham. TAIR10: helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding \| chr4:15767440-15779185 FORWARD LENGTH=2154	SoyBase	E_val: 0	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006310	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA recombination	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0010468	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
KOG0950	KOG	DNA polymerase theta/eta, DEAD-box superfamily	JGI		ISS
PTHR11752	Panther	HELICASE SKI2W	JGI		ISS
PTHR11752:SF3	Panther	DNA HELICASE-RELATED	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
PF00476	PFAM	DNA polymerase family A	JGI		ISS
UniRef100_B9RS63	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase theta, putative n=1 Tax=Ricinus communis RepID=B9RS63_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233ACEE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233ACEE related cluster n=1 Tax=unknown RepID=UPI000233ACEE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g20430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g20430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g140800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g20430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g20430

Limit To All Plant Sequences

>Glyma14g20430.2   sequence type=CDS   gene model=Glyma14g20430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCCTTCGCATCGCTCTCGCATCGATCAGTTTTACGCTTCGAAGAAGAGGAAAGCAGCGTCGCCTGTTCCTAAAGCCGGGAGATTCGAAAAAGGTGCGAGGCATGGGGCTGATGAGTCTCCGAGTGCCAAAGGCACTTTGGAGGGTTACTTGGTTTCGTCACAGGACGGTGGTGGTGACGGCTGCGGTGACGCAAACACTGTTAAGGTTAAGAGAAACTTGACATCGGAGATTGGTGGTTCTCTTGACAATGAGCTTAATAAGCATACTGTTTCATTGGGTCAAGGGTGTGGAGATTCTCAATCTATTCAGCCGAGTGAAATTGGACAGGGTGTGGCGAAATCGGAGAGGAAACAGTTTGCTGCTGACTTTTTGTCTTTGTATTGCAGTGTATTGCATCCGAGTGTGGGTTTGCCGTTGGAGATGAAAATGGATGATCACAAGAGACATGGTTCACCAACATTAGTAGAGGGAAATAGTGTTTTACTGCGGAAGAATAATGACACTGCTGGTGAGCTATGTTTCGGTGGTGAAAATACATTGTTGAGTGTGAAGATCGATGAAGACATCAAGTCTGGTGTTGTTGGTAATAATAATTCTATGGGATGTGTTCCTGGCTCTTGTACGAAGGTTTCTGGTGGTGGTGATACTACTGGCTTTGAGACAGGCTTTAGGAAATGTAATAATACACCTAAACCATCAATGAAATTGGCTGAATACTACAACACACCGGGGTCTTTGATTGTTAAAGCAAGTGTTAGGGAGACTCCAAAGTCAACACGCGGCAGCTCATCATTTTCGCCTGGAGAGGCATTTTGGAATGAGGCAATTCAACTTGCTGATGGTTTGTGTGTTCCCATGGGTAATGATCCTTCTAAGGTTATGGGAGAAAGTAATGTGGTGGAAGAGGAACCTGAGATGAAGAACTCATGCAATTTACAAAATTATGATGGCAAACCAAGGAAAATATTGGATCAAAGTAAAAACAGAATCCGGAATAGGGAAATGGGTGCTCCTTTAGGGTTAGTTGGGATGCACACTAAAGATTCTGTGAAAGAAGCATCCAGCCTTCCTGTTAAACATTTTGATTTTTCGTTTGAGGACAACAATTTGGAAGAAAATACCTTGCAAGACTGTCGTGTTGGTGATTCAATCAATGTTACTTGTGTGGCTGGTAAACAGTATGATTCATGTTCTATGATAGGTCATACATATGAAAAGATGAATGAAGTGCAAGAGAATACTTTAGTAGATACATTAGGCAAAAGGGTTTGTCAGGATAATGTTAGCATGACATCTAATTCACCCCACAATGAGGTCAGGACACCGATTAGTGCACATGCATCTGATGAAGCCAGTACTCCTTCAACTAGTGTATCACTTAATGATCATTTTGACCTAAACAGCTGGCTTCCTCCTGAAATATGCAGCATATATAGAAAGAAAGGAATCTCAAGACTTTACAGTTGGCAGGTTGATTGCCTTCGAGTGGATGGTGTCCTACAGAGAAGAAATCTTGTATATTGTGCTTCTACAAGTGCTGGTAAGAGTTTTGTTGCTGAGATTTTAATGCTGCGGAGGGTGATAATAACTGGAAAAATGGCACTACTTGTTCTTCCGTATGTATCAATTTGTGCAGAAAAGGCTGAACACCTCGAACGTCTCCTTGATCCACTTGGTAAACATGTTCGTAGTTATTATGGAAACCAAGGTGGTGGAACACTTCCTAAAGATACTTCTGTAGCTGTCTGCACTATAGAGAAGGCAAACTCACTAGTTAATAGATTATTGGAAGAGGGGCGTCTATCAGAAATGGGAATTATCGTAATTGATGAACTGCATATGGTTGGTGATCCAAGAAGAGGTTATCTACTTGAACTTATGTTGACAAAGCTTCGTTATGCAGCAGGGGAAGGTATTCCAAAATCAAGTGATGGAGAAAGTTCCGGTGGAAGCAGTGATAAGGCTGATCCTGCCCAAGGTCTGCAAATTGTCGGAATGAGTGCAACAATGCCAAATGTTGCAGCAGTTGCTGACTGGCTTCAAGCAGCACTATACCAGACCGAGTTCCGGCCAGTTCCTCTAGAAGAATATATAAAAGTTGGTAATTCCATTTACAACAAAAGTATGGAACTTTGTAGAATAATCTCAAAAGCGGCTGAACTTGGTGGTAAAGATCCAGATCATGTTGTTGAACTATGTAATGAGGTTGTTCAAGAGGGACACTCAGTTTTAATATTTTGCTCTAGCCGGAAGGGTTGTGAGTCAACTGCAAGGCACATTGCAAAGTTCCTTAAAAGCTTTACTGTTGATGCTAATGATTGTGAGTTTGCCGATATTACTTCTGCTATTAACTCCTTGGGAAAGTGCCCTGCTGGGTTGGACCCCATATTACAGGAAACTCTTCCTTCTGGTGTTGCATTTCACCATGCTGGCCTTACGGTTGAGGAACGAGAGATTGTTGAAACCTGTTATCGGAAGGGCCTTTTACGTGTCTTAACTGCCACGTCAACCTTAGCAGCTGGGGTAAATCTGCCAGCTAGGAGGGTAATTTTCCGCCAACCTAGAATTGGTTGTGATTTTCTAGATGGGACGAGGTACAAACAGATGGCTGGTCGTGCTGGTCGAACTGGAATTGATACAAAAGGAGAAAGTATACTTATCTGTAAACCAGAAGAACTAAAAAAGGTTTCGGGACTGCTTAATGAAAGCTGTCCTCCATTACATTCCTGTTTGTCCGAAGACATGAATGGAATGACTCATGCAATCTTAGAAGTAGTGGCTGGAGGAATTGTTCAAACTGCTAGCGATATTAACCGGTATGTTAGATGTACCCTTTTAAATTCTACAAAACCATTTCTAGACGTGGTGAAATCTGCACAAGAATCCCTTCGATGGTTGTGCCAAAGAAAATTTCTTGAATGGAATGAAGACACTAAACTCTACAGTACCACACCTCTTGGACGTGCATCTTTTGGCAGTTCTCTTTGTCCACAAGAGTCACTTATTGTGTTAGCTGATCTTTCAAGGGCAAGGGAAGGATTTGTCCTTGCATCTGACTTGCATTTAGTTTACTTGGTGACACCAATCAATGTAGATGTTGAGCCAGATTGGGAATTGTACTATGAGCATTTTGTGAAATTGTCTCTGCTTGACCAGTCAGTTGGCAATCGAGTAGGTGTGACAGAACCATTCTTGATGTATATGGCACATGGTGCACCACTACGTGCTTCAAACAAGTCAAGAGATAATACAAGATCATTGCACAATCAACGAAGAAATCAACTTGGGATTTCCAGTGCAACAGCTAACTATGATGATCAAACACTTCGTGTCTGTAGAAGATTCTATGTTGCTCTCATTTTGTCACTTCTAGTTCAGGAAATTCCTGTGGGTGAGGTTTGTGAAGCATTCAAAGTTGCCAGGGGAATGGTTCAAGCCTTGCAAGAGAATGCTGGTAGGTTTGCATCTATGGTTGCTGTGTTTTGTGAGCGACTTGGGTGGCATGATCTTGAAGGCTTAGTTGCTAAGTTTCAAAACCGTGTATCATTTGGAGTTAGAGCAGAGATTGTAGAACTTACCACTATTCCCTATGTTAAAGGTTCTCGAGCCAGATCACTCTATAAAGCTGGTTTACGTACACCCCATGCAATTGCTGAGGCATCCATTCCTGAGATAGTAAAAGCACTTTTTGAATCTTCATCATGGGCCACAGAAGGTTCTGCACAAAGGGGATTTCAATTTGGTATAGCAAAAAAGATAAAGAATGGTGCCCGCAAGATTGTTTTTGATAAAGCTGAGGAGGCAAGTAACGCTGCTTTCTCAGCCTTTAAATCACTTGGGTTCAATGTCCCACAGTTTGATCCTCAAATATTATCTACTGCTGCTCGTGATTCTATCAGGCTAGGAACTGGAAGTACCTCTGGAAGTGACACAACTGATACTAGTCATAGTTTTGTTAATGCAGATTGCATTGATAATACTAATAAATTTACTTTAGATAAAGAAAAAGAAGACTTAATAAAATTATCTGTTAACGGTACTGTGGCTTCTGTAGAAGGAAAATCAAGAAGCAGGATGATATGTAGCTTGTCCAGTGTTCCAGTTGCAGGACCTAAAATGGATGAACTCAATAGGACTTCTGACCATACCAAAAATGCAGACATGACCATTCTCTCTGTTCAATTGCAGAAACCAAATGATAAATCTGGTGTACATGATGGGTGCGATGCTCATTGTACAGAGGAAGCGCATAAGAATGGAAATTTGGCTAGTGGTAATGCTGGTAGTTCCAGCCAGAAAGGTCCCATTAATGCAGTTAGTAGTCCTGGTGGGCTTGATTCATTTTTGGATCTATGGGACTCTATGCCAGAGTTCTATTTTGATATCCATTATATCAAACGATTGGAATTGCACTCTACTGCTCCCTTTGAAATACATGGCATAGCTGTTTGTTGGGAAAACTCTTCTGTGTACTACATTAATCTTCCCAGAGATATTCTGTTGTCTGACAGTATAAAAGATGGCTGTTTATCCTTGAGTGCATGCAGTCATAAGAAGAAAGTTTCATCTTCTAATTCTAAGCAAGATCTAGAGATTGCTAGATCTAGATGGAACAGAATTAGTAAAATAATAGGGAAAATAAATGTCAGAAAGTTCACCTGGAATTTGAAGATTCAGATGCAGGTGCTGAAAAGGCCAGCATTTTCAGTTCAGAGATTTGGTTGCTTGGACACACTTGGAAAAAGTATGGACCTTGAAGTTGTAGACAATTCTTATGTGTTATTGCCCCCTATACATGTTAAAGATGCAATTGATATGTGCATTGTGGCTTGGATTCTTTGGCCCGATGAAGAGAGTAGCTCTAGTCCAAACCTGGATAAGGAGGTAAAGAAGAGGTTATCCTCTGAGGATGCTGCAGTCGCCAATCAGAGTGGCAGGTGGAGGAATCAGATGCGAAGGGCTGCTCATAATGGTTGCTGCCGTCGGGTTGCTCAAATACGAGCATTAAGTTCTGTTCTTTGGAAATTACTTGTTTCTGAGAAACTTGTTGAAGTGCTTATGGATATAGAAATCCCATTGGTGAATGTTGTTGCTGACATGGAGCTTTGGGGAATTGGTGTTGATTTGGAGAGATGCATCCAGGCTCGTAAATTGTTGATTAAAAGGCTAAAGCATCTTGAGAAGGAAGCTTATAAACTGGCTGGAACGACATTTTCATTAAATATGCCAGCAGATATTGCAAGAGTGCTGTATGAACACTTGAAGCTGCCCATACCTGATGTGCGGAATAAGGGAAAGCAACATCCGAGTACTAGCAAGCACTGCTTGGATGCACTGAGGCATGAACATCCCATTGTTCCAGTCATTAAAGAACATCGAACAATGGCAAAGCTGTTGAACTCTACGTTAGGATCAATTTGTTCCCTGGCTAGGCTATCTGTAAGCACACAGAAGTATACATTACATGGTCATTGGCTCCAGACGTCCACGGCAACTGGTCGGCTTTCAATGGAGGAACCTAATCTTCAGTGTGTTGAGCATGCAGTAGAATTCAAAATGAAAGATGAAAATGAAGGTGATGCTGACGAGAGTTATTGTACAATTAATGCTCGTGATTTCTTTGTTCCTACTCAGGACAACTGGTTACTGTTAACAGCAGATTATTCTCAGATAGAATTGAGATTGATGGCTCACTTCTCTAAAGACTCTTCACTTGTTGAACTTCTCAGTAAGCCTGATGGTGATGTCTTTACAATGATAGCAGCAAGATGGACTGGGTGTCCTGAGGTTTCTGTGTGTTCTAAGGAGAGAGAGCAGACCAAAAGGATGGTGTATGGCATTCTTTATGGTATGGGGGTCAATAGCCTTGCAGAACAACTGGATTGCACTTCTGATGAAGCTGCTGAAAAGATTGCTAACTTCAAAAGCTCTTTTCCTGGTGTTTCTTCCTGGCTTCTTGAAGCCGTTGCGTCTTGTCGCAGTAAAGGATATGTTGAGACTCTTAAGGGAAGAAAAAGGTTTTTGTCAAAAATAAAATATGGCAGCAGTACAGAAAAATCAAAAGCTCAGAGGCAAGCTGTAAATTCCATTTGTCAGGGATCTGCGGCAGACATAATTAAGATTGCAATGTTAAGAATTTACTCTGCAATTGTCACTGGATTTGATAGTCCAGATTCCAGTTCTTCACTAGCAACCAAGTTTCACATGCTTAAAGATCGTTGCCGGATTCTGTTACAGGTACACGATGAATTAATGTTGGAAGTTGATCCTTCTGTGATAAAAGAAGCAGCCCTACTATTGCAGACAAGCATGGAGAATGCGGTCTCACTTCTTGTTCCTTTGCATGTCAAACTTAAGGTTGGAAGAACATGGGGATCTTTGGAGCCATATACATCCGATAAATTCAACAATGCCACTCTTGTGGCTGAATCCTGA

Predicted protein sequences of Glyma14g20430

Limit To All Plant Sequences

>Glyma14g20430.2   sequence type=predicted peptide   gene model=Glyma14g20430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASPSHRSRIDQFYASKKRKAASPVPKAGRFEKGARHGADESPSAKGTLEGYLVSSQDGGGDGCGDANTVKVKRNLTSEIGGSLDNELNKHTVSLGQGCGDSQSIQPSEIGQGVAKSERKQFAADFLSLYCSVLHPSVGLPLEMKMDDHKRHGSPTLVEGNSVLLRKNNDTAGELCFGGENTLLSVKIDEDIKSGVVGNNNSMGCVPGSCTKVSGGGDTTGFETGFRKCNNTPKPSMKLAEYYNTPGSLIVKASVRETPKSTRGSSSFSPGEAFWNEAIQLADGLCVPMGNDPSKVMGESNVVEEEPEMKNSCNLQNYDGKPRKILDQSKNRIRNREMGAPLGLVGMHTKDSVKEASSLPVKHFDFSFEDNNLEENTLQDCRVGDSINVTCVAGKQYDSCSMIGHTYEKMNEVQENTLVDTLGKRVCQDNVSMTSNSPHNEVRTPISAHASDEASTPSTSVSLNDHFDLNSWLPPEICSIYRKKGISRLYSWQVDCLRVDGVLQRRNLVYCASTSAGKSFVAEILMLRRVIITGKMALLVLPYVSICAEKAEHLERLLDPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLVNRLLEEGRLSEMGIIVIDELHMVGDPRRGYLLELMLTKLRYAAGEGIPKSSDGESSGGSSDKADPAQGLQIVGMSATMPNVAAVADWLQAALYQTEFRPVPLEEYIKVGNSIYNKSMELCRIISKAAELGGKDPDHVVELCNEVVQEGHSVLIFCSSRKGCESTARHIAKFLKSFTVDANDCEFADITSAINSLGKCPAGLDPILQETLPSGVAFHHAGLTVEEREIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGCDFLDGTRYKQMAGRAGRTGIDTKGESILICKPEELKKVSGLLNESCPPLHSCLSEDMNGMTHAILEVVAGGIVQTASDINRYVRCTLLNSTKPFLDVVKSAQESLRWLCQRKFLEWNEDTKLYSTTPLGRASFGSSLCPQESLIVLADLSRAREGFVLASDLHLVYLVTPINVDVEPDWELYYEHFVKLSLLDQSVGNRVGVTEPFLMYMAHGAPLRASNKSRDNTRSLHNQRRNQLGISSATANYDDQTLRVCRRFYVALILSLLVQEIPVGEVCEAFKVARGMVQALQENAGRFASMVAVFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTTIPYVKGSRARSLYKAGLRTPHAIAEASIPEIVKALFESSSWATEGSAQRGFQFGIAKKIKNGARKIVFDKAEEASNAAFSAFKSLGFNVPQFDPQILSTAARDSIRLGTGSTSGSDTTDTSHSFVNADCIDNTNKFTLDKEKEDLIKLSVNGTVASVEGKSRSRMICSLSSVPVAGPKMDELNRTSDHTKNADMTILSVQLQKPNDKSGVHDGCDAHCTEEAHKNGNLASGNAGSSSQKGPINAVSSPGGLDSFLDLWDSMPEFYFDIHYIKRLELHSTAPFEIHGIAVCWENSSVYYINLPRDILLSDSIKDGCLSLSACSHKKKVSSSNSKQDLEIARSRWNRISKIIGKINVRKFTWNLKIQMQVLKRPAFSVQRFGCLDTLGKSMDLEVVDNSYVLLPPIHVKDAIDMCIVAWILWPDEESSSSPNLDKEVKKRLSSEDAAVANQSGRWRNQMRRAAHNGCCRRVAQIRALSSVLWKLLVSEKLVEVLMDIEIPLVNVVADMELWGIGVDLERCIQARKLLIKRLKHLEKEAYKLAGTTFSLNMPADIARVLYEHLKLPIPDVRNKGKQHPSTSKHCLDALRHEHPIVPVIKEHRTMAKLLNSTLGSICSLARLSVSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHAVEFKMKDENEGDADESYCTINARDFFVPTQDNWLLLTADYSQIELRLMAHFSKDSSLVELLSKPDGDVFTMIAARWTGCPEVSVCSKEREQTKRMVYGILYGMGVNSLAEQLDCTSDEAAEKIANFKSSFPGVSSWLLEAVASCRSKGYVETLKGRKRFLSKIKYGSSTEKSKAQRQAVNSICQGSAADIIKIAMLRIYSAIVTGFDSPDSSSSLATKFHMLKDRCRILLQVHDELMLEVDPSVIKEAALLLQTSMENAVSLLVPLHVKLKVGRTWGSLEPYTSDKFNNATLVAES*

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