Glyma14g20110 - SoyBase

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Report for Sequence Feature Glyma14g20110

Feature Type:	gene_model
Chromosome:	Gm14
Start:	23194670
stop:	23225558
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g20110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24810	AT	Annotation by Michelle Graham. TAIR10: ABC1 family protein \| chr5:8516902-8522616 REVERSE LENGTH=1009	SoyBase	E_val: 0	ISS
GO:0009244	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipopolysaccharide core region biosynthetic process	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1235	KOG	Predicted unusual protein kinase	JGI		ISS
PTHR10566	Panther	CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-RELATED	JGI		ISS
PTHR10566:SF10	Panther	ABC1 - RELATED	JGI		ISS
PF00144	PFAM	Beta-lactamase	JGI		ISS
PF03109	PFAM	ABC1 family	JGI		ISS
PF06176	PFAM	Lipopolysaccharide core biosynthesis protein (WaaY)	JGI		ISS
UniRef100_G7I544	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AarF domain-containing protein kinase, putative n=1 Tax=Medicago truncatula RepID=G7I544_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M9W9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9W9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g20110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g20110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g139800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g20110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g20110

Limit To All Plant Sequences

>Glyma14g20110.1   sequence type=CDS   gene model=Glyma14g20110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTGGGGAGATATTTACAAGAGACGGGTTAGAGTATTTACAATGGCTGTAATAATATACCTGGATTATAAGAGTGTACAACAACGAGAGAAATGGACTAGCAAATCAAGACAAGCTTCATTGTGGGAGAAGGCTCATGAACGTAATGCTAAGCGTGTTCTAAATTTGATAATAGAGATGGAAGGCTTATGGGTTAAACTTGGGCAATATATGTCAACACGTGCAGATGTGCTTCCTGCTGCCTATATACGTCTTTTGAAGCAGTTACAGGACTCTCTTCCTCCTCGACCCTTGGAAGAGGTCTATGGCACCATACAGAAAGAGTTGGGGAAATCGATGGATGAGTTATTTGCTGATTTTGTCAACAAACCTCTGGCAACAGCATCAATAGCACAAGTCCACCGTGCAACTCTGCTCAATGGACATGAAGTGGTAGTTAAAGTTCAACATGATGGTATCAAGACAATTATACTGGAGGACTTAAAAAATGCGAAGTCAATTGTTGACTGGATTGCATGGGCTGAGCCACAATATAACTTTAATCCTATGATCGATGAATGGTGCAAAGAAGCTCCTAAGGAACTTGACTTCAATCATGAAGCTGAAAACACTAGAACGGTGGCTAAAAATCTTGGCTGCAGAAACCAATATGATGGAAATATGAGAGCCAATAGAGTGGATGTTTTAATCCCAGATGTAATTCAGTCTACAGAAAAAGTCCTTGTTTTGGAGTACATGGATGGCATTCGGTTGAATGATTTAGAATCACTAGAAGCTTATGGAGTAGATAAACAAAAGCTTGTTGAGGAGATTACTCGTGCCTATGCCCACCAAATATATATTGATGGATTTTTCAATGGTGATCCTCATCCAGGAAATTTTCTTGTGAGCAAGGAATCTCCACATCGTCCTATTTTACTTGACTTTGGCCTTACAAAGAAACTATCAAGCACCATTAAGCAAGCACTTGCAAAGATGTTTTTGGCTTCTGCTGAGGGGGACCATGTGGCCCTCCTGTCTGCCTTTGCAGAAATGGGGCTTAAGTTGCGTCTGGACATACCAGAGCAGGCAATGGAAGTAACAGCTGTATTTTTTCGTGCGACAACACCCGCAAATGAATACCATAAAACAATGAAATCTCTAGCCGATCAAAGGGACAGAAATATGAAGGTTATACAGGAGAAAATGAACCTTGACAAAAAAGAAATGAAACGCTTTAATCCTGTTGATGCATTTCCTGGTGATATTGTAATATTTGGAAGGGTTCTTAATCTTCTAAGAGGGCTTTCTTCCACTATGAATGTACAAATAGTATATATGGACATTATGAGGCCATTTGCAGAATCAGTTTTGCGTGGGTACATTAGTAAAGGACCATCCGTAAATGATAGATGGATTTTTGATTCACCAGTCCATTCTGATGTAGAATCCATGCTGAGGCAGCTTTTAATCGAGATGGGAAATAATGATAAAATACTCGGAATCCAGGTATGTGCCTACAAAGATGGAGAGGTCATTATTGACACTGCTGCAGGAGTGCTTGGTAAATATGATCCACGTCCGGTTAAGCCTGATAGCCTTTTTCCGGTGTTTTCTGTTACAAAGGGTATCACAGCAGGAATGATACATTGGCTGGTTGACAATGGACAACTAAACCTTGAAGAGAATGTTGCAAATATTTGGCCAGCATTTGGATCAAATGGGAAGGATGTCATTAAGGTTCACCATGTACTTAACCATACATCTGGTTTGCACAATGCAATGGGAAGCATAGCTCAAGAAGACCCTCTTCTGATGTTTGATTGGGATGGATGTTTAAATCGCATTTGTCAGTCAGTACCTGAGACTGAACCAGGCAAGGAGCAGTTTTATCATTATTTATCATTTGGCTGGTTGTGTGGAGGAATCATTGAGCATGCTTCTGGCAAGAAATTTCAGGAGATTCTTGAAGAAGCAATAGTTCGCCCCCTCCATATTGAAGGGGAGTTATATGTAGGGATTCCGCCAGGGGTGGAATCACGTCTTGCCGCTCTGACTGTAGATACTGCTGATTTAAGCAAAGTCTCAGCACTCGCTAATCGTCCTGACCTTCCCTCCACCTTCCAACCACAGCAAATTGCTCAACTTGCAACCAGTTTACCTGTTGCTTTCAATACACTGAATGTTCGCCGTGCCATCATACCAGCAGCTAATGGACATGTATCTGCCCGGGCACTTGCACGTTATTATGCAGCCCTAGCTGACGGTGGCAAGATACCACCACCTCATTCTTCTGCTTCTAAGCCAGTACTTGGTAGCCATCCCCACATCCCCAAATTATCTTCTTCCCCGAAACCCCCTAAAACCCGAAAATGTATTGGACGGAGGAAGCAAGCAACTTCGACTTCAGTTAGTACTACTAACAGTTATGAAAAAGTTTCTAGTTACGATGATTCTGAGGCTAATAAGGGCAGAAATACCAACAGCGAGAGTAGCAGTGGTGATGATGCCAGTAGTAGCAGAATTAGTAATAATCTGAGATCCCATGTTGCTGGTAAGGTCTACAAGAATCCTAGGATTATTGATGAATTCTTGGGTACAGGAGAGTACACGAATTTAGCTTTGCCAGGGGAAGGTTTTGGCCTAGGGTTTAAGAGGTTTACGTCGAAGGATGGGTCATCCATTGCCTTTGGTCACTCGGGAATGGGTGGCTCCACAGGTTTTTGTGATGTCACCAATAACTTTTCTATTGCTGTGACACTGAACAAAATGTCCTTTGGAGGTGTCACGGGAAAAATTGTCCAACTTGTGTGTTCAGAGTTAAATATTCCTGTTCCAGACGATTTCTTGAGATTTGCGGTTGAGCAAAGTGGACCCGATGAGCAATTATCTATGGGGAGGCCCATTATTAATTGA

Predicted protein sequences of Glyma14g20110

Limit To All Plant Sequences

>Glyma14g20110.1   sequence type=predicted peptide   gene model=Glyma14g20110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWGDIYKRRVRVFTMAVIIYLDYKSVQQREKWTSKSRQASLWEKAHERNAKRVLNLIIEMEGLWVKLGQYMSTRADVLPAAYIRLLKQLQDSLPPRPLEEVYGTIQKELGKSMDELFADFVNKPLATASIAQVHRATLLNGHEVVVKVQHDGIKTIILEDLKNAKSIVDWIAWAEPQYNFNPMIDEWCKEAPKELDFNHEAENTRTVAKNLGCRNQYDGNMRANRVDVLIPDVIQSTEKVLVLEYMDGIRLNDLESLEAYGVDKQKLVEEITRAYAHQIYIDGFFNGDPHPGNFLVSKESPHRPILLDFGLTKKLSSTIKQALAKMFLASAEGDHVALLSAFAEMGLKLRLDIPEQAMEVTAVFFRATTPANEYHKTMKSLADQRDRNMKVIQEKMNLDKKEMKRFNPVDAFPGDIVIFGRVLNLLRGLSSTMNVQIVYMDIMRPFAESVLRGYISKGPSVNDRWIFDSPVHSDVESMLRQLLIEMGNNDKILGIQVCAYKDGEVIIDTAAGVLGKYDPRPVKPDSLFPVFSVTKGITAGMIHWLVDNGQLNLEENVANIWPAFGSNGKDVIKVHHVLNHTSGLHNAMGSIAQEDPLLMFDWDGCLNRICQSVPETEPGKEQFYHYLSFGWLCGGIIEHASGKKFQEILEEAIVRPLHIEGELYVGIPPGVESRLAALTVDTADLSKVSALANRPDLPSTFQPQQIAQLATSLPVAFNTLNVRRAIIPAANGHVSARALARYYAALADGGKIPPPHSSASKPVLGSHPHIPKLSSSPKPPKTRKCIGRRKQATSTSVSTTNSYEKVSSYDDSEANKGRNTNSESSSGDDASSSRISNNLRSHVAGKVYKNPRIIDEFLGTGEYTNLALPGEGFGLGFKRFTSKDGSSIAFGHSGMGGSTGFCDVTNNFSIAVTLNKMSFGGVTGKIVQLVCSELNIPVPDDFLRFAVEQSGPDEQLSMGRPIIN*

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