Glyma14g20040 - SoyBase

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Report for Sequence Feature Glyma14g20040

Feature Type:	gene_model
Chromosome:	Gm14
Start:	22829000
stop:	22835505
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g20040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24800	AT	Annotation by Michelle Graham. TAIR10: basic leucine zipper 9 \| chr5:8515259-8516541 FORWARD LENGTH=277	SoyBase	E_val: 7.00E-32	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0071333	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to glucose stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR22952	Panther	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	JGI		ISS
PTHR22952:SF65	Panther	ATBZIP9/BZO2H2 (BASIC LEUCINE ZIPPER O2 HOMOLOG 2)	JGI		ISS
PF12498	PFAM	Basic leucine-zipper C terminal	JGI		ISS
UniRef100_I1M9W7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9W7_SOYBN	SoyBase	E_val: 2.00E-160	ISS
UniRef100_Q0GPE8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP16 n=1 Tax=Glycine max RepID=Q0GPE8_SOYBN	SoyBase	E_val: 5.00E-145	ISS

Expression Patterns of Glyma14g20040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g20040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g139700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g20040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g20040

Limit To All Plant Sequences

>Glyma14g20040.1   sequence type=CDS   gene model=Glyma14g20040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCCAAGTGGGGTGGCGCCCCCGCCAGCATCATGGCGGCGAATTTCGACGACTTCAAGTGGATCGCCTCCATGTTCGATCCCGGAAACGACGACGTCAAGCCCTTCTCCGACGCAGCTTTCCAAAACCAGGATGCAGTAACTGCATTTTCAACTTGTGGTGGAGTAACAGATGATACCCTTGTTCGTTCCCAAAACCTCACTCCCATTCAATCCACCATTTCTGCAACTATTGATTCTCAGTCTTCCTTTTGTGGTACCGTTGGGAGCGCAGGGTCTGCTAACAAACCAAAAGTGAGAGATACTCATGTTGAACGGCTGAGACTGGAAAATGCAAACCTATTTAAGCAGCTTACAGATGCCAGCCAACAATTTCGTGACGCTGATACGAATAACCGAGTCCTAAAATCAGATGTCGAAGCTTTGAGAGCTAAGGTGAAATTAGCTGAGGATATGGTCACTCGTGGCACACTCACCCCTATCAACAACCAGATTCTTCAAAATCAGAGTTCACTAAACACCCCACCTCAACTCAACACAAATAATCTACACCGCATGACACATGTTTCGCCAACCATCACCGTCCGTGGGAATGATGATGCTTCATATGGAGGTGGAATTACAGTTAGTGGACAAAATTCACCTCTTGGTGGGCTTGGAAACTTGGATAATATTCCTTGCAGCGATTTCAATAGTGGAATCAATAGTAATAATGCTGTGAGCTCTATGACTAGCATGTGGCCTTAA

Predicted protein sequences of Glyma14g20040

Limit To All Plant Sequences

>Glyma14g20040.1   sequence type=predicted peptide   gene model=Glyma14g20040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESKWGGAPASIMAANFDDFKWIASMFDPGNDDVKPFSDAAFQNQDAVTAFSTCGGVTDDTLVRSQNLTPIQSTISATIDSQSSFCGTVGSAGSANKPKVRDTHVERLRLENANLFKQLTDASQQFRDADTNNRVLKSDVEALRAKVKLAEDMVTRGTLTPINNQILQNQSSLNTPPQLNTNNLHRMTHVSPTITVRGNDDASYGGGITVSGQNSPLGGLGNLDNIPCSDFNSGINSNNAVSSMTSMWP*

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