Glyma14g20000 - SoyBase

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Report for Sequence Feature Glyma14g20000

Feature Type:	gene_model
Chromosome:	Gm14
Start:	22766229
stop:	22767477
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g20000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29150	AT	Annotation by Michelle Graham. TAIR10: non-ATPase subunit 9 \| chr1:10181240-10182499 FORWARD LENGTH=419	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0030163	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein catabolic process	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0000502	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008541	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, lid subcomplex	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
KOG1463	KOG	26S proteasome regulatory complex, subunit RPN6/PSMD11	JGI		ISS
PTHR10678	Panther	26S PROTEASOME SUBUNIT S9	JGI		ISS
PTHR10678:SF2	Panther	SIGNALOSOME SUBUNIT CSN2	JGI		ISS
PF01399	PFAM	PCI domain	JGI		ISS
UniRef100_G7I549	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit n=1 Tax=Medicago truncatula RepID=G7I549_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M9W6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9W6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g20000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g20000 not represented in the dataset	Glyma14g20000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g20000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g139600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g20000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g20000

Limit To All Plant Sequences

>Glyma14g20000.1   sequence type=CDS   gene model=Glyma14g20000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCTTTTCTTCCCGCCACAACAGAGTCACTTGATCTGGCAGTGGATGCCAAAGACCCATCCGAGTCCATCTCCATTCTTTATCAGGTACTTGATTATCCTTCTTCTTCTCCAGATGCTCTGCGCATGAAAGAACAGGCCATCACAAACCTCACTGAGCATCTCAGGGAACAAAATAGGGCAGAGGATCTGCATAGCCTTCTTACTCAGTTGAGGCCCTTCTTTTCCTTGATTCCTAAGGCAAAAACAGCAAAGATAGTGAGGGGCATAATTGATTCTGTTGCAAAAATACCAGGGACTACTGATCTACAAATTACACTCTGCAAAGAAATGGTGCAATGGACACGTGCTGAAAAGCATACCTTTCTGAGGCAGCGAGTTGAGGCAAGGCTTGCAGCATTTCTAATGGAAAGTAAGGAGTATTCTGAAGCTTTGACTCTCCTTAGTAGCCTGGTCAAAGAGGTTAGAAGACTGGATGACAAGCTTCTACTTGTAGACATAGACTTGCTTGAAAGCAAGCTACACTTCTCCTTAAGAAACCTTCCAAAGGCAAAAGCTGCCCTCACAGCTGCTTATTTATGTTCCTCCTGCTCAACAAGGTTCCATAGATCTGCAGATTATTTCTTTGAAGCTTTTGAATCTTTCAATGCTCTTGATGACCCCAAGGCTATCATGGTGAGTCAAGCTGATGATGTGGCTGGAATTATATCTTCTAAAGCTGGCCTGCAGTATCTTGGGCCCGACTTGGATGCCATGAAAGCTGTTGCAGACGCTCATTCTAAGCGATCTCTGAAGTTATTCGAAATTGCTTTGCGAGATTTCAAGGCTCAGCTGGAGGAAGACCCAATTGTACACAGGCACCTGTCATCCATGTATGATACTCTCATGGAGCAGAACCTTTGCAGATTGATTGAACCATTCGCAAGGGTTGAGATTGCACACATTGCTGAACTAATTGAACTTCCTGTTGATCCCGTTGAGCGAAAGTTGTCTCAGATGATTTTGGACAAGTTGTTTGCTGGGACATTGGATCAAGGAGCTGGATGCCTCGTCATATTCGATGATTCCAAAACTGATGCAATATACCCTGCAACCTTAGAAACCATTTCCAATATTGGGAAAGTTGTGGACAGTCTTTTTGTTAGGTCCGCCAAGATAGTGGCATGA

Predicted protein sequences of Glyma14g20000

Limit To All Plant Sequences

>Glyma14g20000.1   sequence type=predicted peptide   gene model=Glyma14g20000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSFLPATTESLDLAVDAKDPSESISILYQVLDYPSSSPDALRMKEQAITNLTEHLREQNRAEDLHSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTTDLQITLCKEMVQWTRAEKHTFLRQRVEARLAAFLMESKEYSEALTLLSSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAAYLCSSCSTRFHRSADYFFEAFESFNALDDPKAIMVSQADDVAGIISSKAGLQYLGPDLDAMKAVADAHSKRSLKLFEIALRDFKAQLEEDPIVHRHLSSMYDTLMEQNLCRLIEPFARVEIAHIAELIELPVDPVERKLSQMILDKLFAGTLDQGAGCLVIFDDSKTDAIYPATLETISNIGKVVDSLFVRSAKIVA*

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