SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma14g19950

Feature Type:gene_model
Chromosome:Gm14
Start:22571580
stop:22572966
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g19950
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G70100AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 3305 Blast hits to 2533 proteins in 359 species: Archae - 8; Bacteria - 641; Metazoa - 1288; Fungi - 248; Plants - 240; Viruses - 42; Other Eukaryotes - 838 (source: NCBI BLink). | chr1:26403736-26405770 F SoyBaseE_val: 2.00E-48ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_B9DFN3UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT1G70100 protein n=1 Tax=Arabidopsis thaliana RepID=B9DFN3_ARATH SoyBaseE_val: 8.00E-46ISS
UniRef100_I1J5F8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5F8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g19950
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g19950 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g139300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g19950
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g19950
>Glyma14g19950.2   sequence type=CDS   gene model=Glyma14g19950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAGAGTGTTGTTGCTTCCAATCCTACTTTGCAAGTGTTTGTTTCGGTTGGTAGATTTGAGAATGATTCCTTGTCTTGGGAGAGATGGTCCTTTTTCTCTCCAAACAAGTACTTGGAAGAGGTTGAGAAGTGTGCCACACCTGGATCAATGGCCCAGAAGAAAGCCTACTTTGAGGCTCATTACAAGAAGGTTGCTGCCCGGAAAGCCGAATTGTTGGCTCAAGAGAAGCAAAGGGAGAAAGATTCTTTCGGATCAGAAGAACATAATGGAATAGATTTGAGTGGTAACACTGATGCAAAACATGATATATCCAACAACACTCAAGGTTCCGGTGAAAGGGTTGAGCATGAAAATAGTTCTGTTGGTGAGATCCATAGGACTCATGTTAATGAATCTGAGGAGGAATTTGCAGTTTCAAGGGATTACCAAAGTTCATCAGTTCAGATAAATGAACCTGAAAATGTATGCAAGAAACAAGTGGAAAGTCCTAACAACAACATTGAAGCGGAAGATGTGAAGGAAATTTCACATGTTGTGTACAAGGAGACTATAAAGGCTTCAAAAGTTGAAGTAAAAGATGTGAAATTGAATCATCCAAAGGAATCTAAGGTTAAGTCTATGAGTAAGGGTAGCAATGCAGCCAAGACTAAGAAGAAATCAATGCTACCTACTTCTAAGGCATCCCCAATTTCAACACCACAAAGTTCAAAGCCTGCATCAAAAACTCCTACCAAAACAGTGACACCTGCTTCTTCAACTAGAAAGGGAAGCTCTCCATCTTTGACTAGGAGACAAATTACTTCTAGTAGGGAGAGTAGAAAATTTGCTAACAAACCTTTGCACATGTCTTTGACCTTGCCTCCAAGTAATCCTGATCCAGCTCCTCAAAGTACCATGAGGAGATCTTTAATTATGGAGAACATGGGGGATAAGGACATAGTCAAACGAGCATTTAAGACATTCCAGAATAGTTTCAACCAGCCAAAAACTTCTGTTGAAGACAAATCTTTGATAAAGAAGCAGGTTCCTTCAAGGGGAATTGTGTCAAAGGTTCCAACATCTACAACTTTGAGGAAAGAAAATGGACGGTAA
Predicted protein sequences of Glyma14g19950
>Glyma14g19950.2   sequence type=predicted peptide   gene model=Glyma14g19950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGESVVASNPTLQVFVSVGRFENDSLSWERWSFFSPNKYLEEVEKCATPGSMAQKKAYFEAHYKKVAARKAELLAQEKQREKDSFGSEEHNGIDLSGNTDAKHDISNNTQGSGERVEHENSSVGEIHRTHVNESEEEFAVSRDYQSSSVQINEPENVCKKQVESPNNNIEAEDVKEISHVVYKETIKASKVEVKDVKLNHPKESKVKSMSKGSNAAKTKKKSMLPTSKASPISTPQSSKPASKTPTKTVTPASSTRKGSSPSLTRRQITSSRESRKFANKPLHMSLTLPPSNPDPAPQSTMRRSLIMENMGDKDIVKRAFKTFQNSFNQPKTSVEDKSLIKKQVPSRGIVSKVPTSTTLRKENGR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo