Glyma14g18790 - SoyBase

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Report for Sequence Feature Glyma14g18790

Feature Type:	gene_model
Chromosome:	Gm14
Start:	21094129
stop:	21098775
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g18790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31270	AT	Annotation by Michelle Graham. TAIR10: sequence-specific DNA binding transcription factors \| chr4:15183291-15184503 REVERSE LENGTH=294	SoyBase	E_val: 4.00E-40	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0043687	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-translational protein modification	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
UniRef100_B9SPS8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SPS8_RICCO	SoyBase	E_val: 5.00E-30	ISS
UniRef100_I1M9V5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9V5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g18790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g18790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g138000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g18790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g18790

Limit To All Plant Sequences

>Glyma14g18790.1   sequence type=CDS   gene model=Glyma14g18790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAGCACGACAATGACGTCATCACCAATGCCGTTTCGGGGAGCGGGTTCCGGCGCACGCGCTCGCAGGCGGAGCCGGACTGGAGCGTGACGGAATCGCTGATTCTGGTGAACGAGGTCGCGGCGGTGGAGGCGGACTGCTCCGTCGCGCTCTCCTTGTACCAGCAGTGGAACATCATCGCCGAGAACTGCGCCGCCCTCGACGTGCCGCGGAGCCTCCCGCAGTGCCGCCGAAAGTGGCGCGCGCTGCTCGCGGCCTACGACGGCGCCAGGGGAGCGAGGGGCGCGATGCCGCCGCCGGGCTTCGACCGCGAGCTGTTTGAGGCCATCGAACGCGTTGTGAGGGCGCGTGAGGAGCGGGGGATGGTGGATCCTGGGAGCGATGATGAAGATGGGAACGAGGCGCGCGACGCAACCGTGGAAATTGGGTCCAAAAGAAAACGGCAACGAAGTAAATCGAGATGCCAAGTTCAAAAGCCTAAGAAATTTCATGAACAAAGGCCTGAGGACAGCTATGAAGAAGGGCTCGAGGATGATAATTTAGAGGACGAGTATTTGAAAGACTTCCTAGAATCAAGACCTAAGTTGAAAGGTACTGCAGAAAGACCTCCAAAGCACTTGGTGATGCCACCAAAGAGTCCGGGCAGAGTAGAGCTGAATGAAAACCACCATATCAAAAGGCCAAAGCCGATTGGCACAGAAAATATAACATTTAACAGGGAAGAAAATGAGGAAACATTGACTCTGAAATTGCAAGTGTTGGCTGTAGAAATCGGAACAATTGCTAGTGAATCAGCAGCAGACTATAAGGGGGGTGTCTCACAAAATTTAGAGGACTCCCATTTTGACTTTACAAGATGCCAAGGGGACAAGCTCATAGCAAGCCTGGGAAATTTCTTCAACACCCTTAAGCATCTACGTGATACTCCCCAAGAGTGTAACTGA

Predicted protein sequences of Glyma14g18790

Limit To All Plant Sequences

>Glyma14g18790.1   sequence type=predicted peptide   gene model=Glyma14g18790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEHDNDVITNAVSGSGFRRTRSQAEPDWSVTESLILVNEVAAVEADCSVALSLYQQWNIIAENCAALDVPRSLPQCRRKWRALLAAYDGARGARGAMPPPGFDRELFEAIERVVRAREERGMVDPGSDDEDGNEARDATVEIGSKRKRQRSKSRCQVQKPKKFHEQRPEDSYEEGLEDDNLEDEYLKDFLESRPKLKGTAERPPKHLVMPPKSPGRVELNENHHIKRPKPIGTENITFNREENEETLTLKLQVLAVEIGTIASESAADYKGGVSQNLEDSHFDFTRCQGDKLIASLGNFFNTLKHLRDTPQECN*

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