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Report for Sequence Feature Glyma14g18500

Feature Type:gene_model
Chromosome:Gm14
Start:20694040
stop:20699913
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g18500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G21080AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT3G20300.1); Has 141 Blast hits to 141 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 140; Viruses SoyBaseE_val: 9.00E-171ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF12056PFAM Protein of unknown function (DUF3537) JGI ISS
UniRef100_D7LAY2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Extracellular ligand-gated ion channel n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LAY2_ARALL SoyBaseE_val: 1.00E-83ISS
UniRef100_UPI000233AB76UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233AB76 related cluster n=1 Tax=unknown RepID=UPI000233AB76 SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g18500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g18500 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g137800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g18500
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g18500
>Glyma14g18500.2   sequence type=CDS   gene model=Glyma14g18500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCACTCCAAATCCAATGACACAAGCATTGACATTGAACCCTCCAACAGAAGAGTGTCTTTTGCTGAAAACCACCCAAATGAACAAGAACCACCTCATCATCACCAACCCTATAACAACAGTATTCCCTTGCTCCTACAGCCATCATATGCGAGATCAAAGTCCATAATCTTCGATGAGCTGCGAAACTTTCGCATCAGCCTCAAGTGGTGTGCCCTTGATCACTCTTCATTCATTGGCAGACTCATATCCTACGTGACCTTCATCTTCTTCACCATCGTTGTTCCTCTTTTCACATCGATCTTCGTCGAAGTCCCAGCCTCTGCACCAGAAGATGATCCCATCTCCTTTAACAAGCTTGTTCAACTGCCAGAATCTGGCCTTGCCATTGTTGCCTTCTTCACTCTCTCCAGTTTCTTCAAAAGGTATGGCCTTAGGCAGCTTCTGTTCCTAGATGCTTTACAAGAAGACACTACCTATGTTCGACGCGGGTACACGAGGGAGCTTGAGAAGGCTTTCAGATACTTGACATACATAATCTTACCCTCTTTCTTTATGGAACTTGCCCACAAGATCATATTCTTTTCAGCCGTTAAGATTTCAGCCCCACACATCAGCCCTGGGTTCCCATTGAACTCAATTGTCTTTGTGTTGGTGTTGGTGTCTTGGGTCTACAGAACTGGGGTGTTCCTGTTGGTATGTGTTCTCTTCAGGCTCACCTGTGAGCTTCAGAAGCTGAGGTTTGAAGGGGTGCACAAGCTTTTTGAAGGCTGTGGGTCTGAGGCAGGCGTGATATTCAAAGAACATGTGAGGATCAGAAGGCAGTTGTGGGTTACAAGCCATAGGTATAGGTTCTTCATAATTGGGTGTGTGGTTACAATCACTGTTAGTCAGTTGGGTGCTTTGCTGTTGGTTTTGGCTTCCAAGTCTGATAAGACCTTCTTCAATTCTGGTGACCTTGTGATTTGTTCAGCTGTGCAGTTAAGTGGCTTCTTCTTGTGCATTTTGGGAGCAGCAAGAATCACACACAGAGCACAAGGAATAGTGGCAATTGCAACAAGATGGCACATGCTGGTGACTACTGCATCTGCTGAATCAGAGCATTGCGAAGCTCAGGTGTCTGAGGGGCTAGCTAGTGATGATGACAGTGACTCTGATGATTCCTCCAACATACACGTATCAGTGATCCCACCACAACTTTCTTCTTTCCAAACCAGACAAACTTTAGTGACATATTTACAACACAATCACGGAGGAATAACGGTGTATGGGTACTCACTTGATCGAGGATTGCTTCATACTCTGTTTGCCTTCGAGTTTTCTCTAGTGCTATGGATTCTGAGTAAGGTTGTTGTTTTGTCCTAA
Predicted protein sequences of Glyma14g18500
>Glyma14g18500.2   sequence type=predicted peptide   gene model=Glyma14g18500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNHSKSNDTSIDIEPSNRRVSFAENHPNEQEPPHHHQPYNNSIPLLLQPSYARSKSIIFDELRNFRISLKWCALDHSSFIGRLISYVTFIFFTIVVPLFTSIFVEVPASAPEDDPISFNKLVQLPESGLAIVAFFTLSSFFKRYGLRQLLFLDALQEDTTYVRRGYTRELEKAFRYLTYIILPSFFMELAHKIIFFSAVKISAPHISPGFPLNSIVFVLVLVSWVYRTGVFLLVCVLFRLTCELQKLRFEGVHKLFEGCGSEAGVIFKEHVRIRRQLWVTSHRYRFFIIGCVVTITVSQLGALLLVLASKSDKTFFNSGDLVICSAVQLSGFFLCILGAARITHRAQGIVAIATRWHMLVTTASAESEHCEAQVSEGLASDDDSDSDDSSNIHVSVIPPQLSSFQTRQTLVTYLQHNHGGITVYGYSLDRGLLHTLFAFEFSLVLWILSKVVVLS*






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