Glyma14g18300 - SoyBase

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Report for Sequence Feature Glyma14g18300

Feature Type:	gene_model
Chromosome:	Gm14
Start:	20423011
stop:	20461893
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g18300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31210	AT	Annotation by Michelle Graham. TAIR10: DNA topoisomerase, type IA, core \| chr4:15165280-15172534 FORWARD LENGTH=1284	SoyBase	E_val: 0	ISS
GO:0006265	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA topological change	SoyBase	N/A	ISS
GO:0006268	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA unwinding involved in replication	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005694	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chromosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003916	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA topoisomerase activity	SoyBase	N/A	ISS
GO:0003917	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA topoisomerase type I activity	SoyBase	N/A	ISS
KOG1956	KOG	DNA topoisomerase III alpha	JGI		ISS
PTHR11390	Panther	PROKARYOTIC DNA TOPOISOMERASE	JGI		ISS
PF01131	PFAM	DNA topoisomerase	JGI		ISS
PF01396	PFAM	Topoisomerase DNA binding C4 zinc finger	JGI		ISS
PF01751	PFAM	Toprim domain	JGI		ISS
UniRef100_B9SPT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA topoisomerase n=1 Tax=Ricinus communis RepID=B9SPT5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233AB72	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AB72 related cluster n=1 Tax=unknown RepID=UPI000233AB72	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g18300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g18300 not represented in the dataset	Glyma14g18300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g18300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g137100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g18300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g18300

Limit To All Plant Sequences

>Glyma14g18300.1   sequence type=CDS   gene model=Glyma14g18300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCAACTTCACAGAACCTTCTTCTCCACCACCACCTCCTCCGTTCCTTCCTCATACCCTCTCTCTCTTGGCCACTTCATGTTGCAGTTCAGGGCGCTCCAGGCTCCACCAATTGCTCTCGCGCCGCACGCCACGTCATCCCTCATCGGCGCCACCGTCCAATGCCGAACGCGTCTTCTCTTCCCTCGAAGGGTTACCGCGAAATGCCACGCGACGTCGTTTAGCAATTTCCGTTTCCCGTTTGCTTTGAACTCCACGACGTCGTTTGGGGGCAGCGTTTTCTCGAGGGGGTTTGCGACGCGCGCGGCGGAGAACGGTAAGCAGAAGAAACGGGCGAGGGCTGCTGTCGTTCGCGGAAAGGAGAAGGACGAAGGTGTGATAAATGACGCCGCGCCGAAAGAGTTTGACAATGTGACCGCTTCTGAGGGAAGTTTGGGTGAGAAGAAGAAGAATAAGAAGGGATCGTCACCCGTCGCCGCTAGTGGCAAAGAAGATGAGAAGAGTGTGAAGAAGAAAACGGCGAAGAAGAAGACCACGACGACTTTGCGGAGCAAGAAGGTGGCTGCCAGCAGCACCCAAGAGGATGGTGCTGCTGAAGCTTCTAAAAAATCTTACAAAGGGAAGAAGAAGAAGGATTCGAAGAAGAGTTTGACCGAGAGTGCTATTGAAGAAATGCCGGAGAATTCTGCTTCTGCAAAGGACGAGTTGAAGAAGAAAAATGGGAATTCTAGTGTGATTGAAGAGGTGAAACCCCCATGGAATTTTACGTACAAGCCATTGTATCCTCCCACTAGAAAGTCTGTGGTGGTTGTGGAGTCTGTTACAAAGGCGAAGGTTATTAAGAGATACCTTGGTGATATGTATGAAGTCTTGCCAAGCTATGGTCATGTGAGAGACTTGGCTGCAAGGTCTGGATCAGTGAGACCTGATGATGATTTTAGTATGGTGTGGGAGGTTCCGCCGCCTGCCTGGACTCATTTGAAGAGCATCAAGGTTGCACTGAGCAGAGCAGAAAACCTTATTCTTGCATCGGATCCAGATCGTGAGGGAGAAGCTATTGCTTGGCACATCATTGAGATGTTACAACAACAGGGTGCTCTACACGATAATATTTCCTTAGCAAGAGTAGTCTTTCACGAAATAACTGAAAAATCCATAAAAGGTGCCCTACAAACACCACGAGAGATTGACGTAAATTTGGTTCAAGCTTACCTTGCTCGGCGGGCTCTTGATTACTTGATTGGGTTTAACATTTCACCATTACTATGGAGGAAGTTACCAGGTTGCCAATCAGCTGGAAGAGTTCAATCTGCTGCACTTTCTCTTATATGTGATAGAGAAATGGAAATTGATGAATTTAAACCGAAGGAGTATTGGACTGTGGAGGTTCAAATGAAAAAGAAAGAGCTGAGATCAAACAAGAACCTTACTTTTCCTGCTCACTTGACCCATTTTGATTCAAAAAAGTTGAATAAGTTTTCAATTACTTCTGATACCGAGGCAAGAGATATTCGAAGCAATATAAACTCAGCTGATTTTCATGTTGTTAGCTTGAAAAAAAACAAAAGTCGAAGAAATCCTCCAACACCTTATATAACATCGACACTTCAGCAAGATGCTGCAAACAAGTTGCATTTCACTGCAAGTCACACAATGAAGCTTGCACAGAAGCTCTACGAGGGAGTTGAACTGTCTGACAGTGTAGCAGTGGGTCTGATAACATATATCAGAACTGATGGACTCCATATTTCTGATGAAGCTGTAGCTAGTATACGCTCGCTGATCATTGAAAGGTATGGACAAGATTTTGTCTCACAAAGTGCACCAAAGTATTATAAAAAGGTGAAAAATGCACAAGAGGCCCATGAAGCCATTAGACCAACTGACATACGCAAGTTGCCATCAATGCTTTCTGCGATACTTGATGAAGAATCCTTGAAGCTCTACACACTTATTTGGTCACGAACAGTTTCATGTCAAATGGAACCTGCTGTCTTTGAGCAGATACAACTTGATATTGGAAATCTTGATGAGTCTATTATATTACAGTCTTCCATCTCAAGGGTTGAGTTTCCTGGATATCGAGCAGTTTTTACGGACATTGTTAGTGAAGCTGTTCAAGATAAAGGCAGTGATGAATCCAGCCATGATCAAACATTTGGAGTACTAAATTCCTTGAAGACAGGGGATTCATTACACGTGGTTCAAACTGAACCTAATCAGCACCATACACAGCCGCCACCACGGTACTCTGAAGCATCATTGGTTAAGAAGCTTGAGGAGCTTGGGATTGGAAGGCCATCAACATATGCATCCACGATAAAAGTTTTGCAGGATAGAAACTATGTGACAGTAAAAAGTCGAGTTCTGTCTCCAGAATTTCGTGGTCGCATGGTTTCAGCTTTTCTGTCGAACCATTTTTCAGAGGTCACGGACTACAGTTTTACTGCCGATATGGAAACCGAGCTTGATAATGTTTCTGCTGGATTAACTGAATGGAAAGGCCTCCTTAGAGACTATTGGACACGATTTAAATCATATTGTGAGCGTACTTCCAATGTTCATATTCATCAGGTAGAGAAGATGTTGGAAAAGAAATTTGGCGATTATTTATTTGCTTCTCTCCCAGATCAGAGTCGGGTGTGTCCAAGCTGTATGGAAGGCACACTTATTTTTAAAGTAAGTAGATTTGGTGCTGGGTACTTTATAGGCTGTGATCAACATCCGAGGTGCAAGTACATTGCTAAAACATTATATGGTACCGAGGAGGAAGAGGATGCATCTCAGCCAAACACTAGAATAGAGGAACCAAAACTCCTTGGTGTTACCAGTGGTTCAAATGAAAAGGTTCTTTTGAAAAGTGGTCCTTACGGAGTCTATGTTCAGCTCGGAGAAGATAGGAAGGGATACATACCTAGAAGAGCTTCTGTCTCTCATATCAAGGATGTGGATTCTATCACTCTTAAAGATGCACTTGAGGTGCTACAATACCCATTGACATTGGGTAACCATCCTAAGGATGGACAGCCTGTCATATTAAGGCTTGCAAGAGCTGGGTTTTGTGTTAGACATCGGCGAACAATTGCTTCTATTCCTAAGAATGTGAAGCCAAGTGATGTCACCCTGGAAAAAGCCCTTGAATATTTATCTGGTGATGATGTGAGACGATCTGGTCGTCCAAAAAAAGGCAAATCTAAAGTTGAAGTTGAAGTTATTGAAGCGTTTTAA

Predicted protein sequences of Glyma14g18300

Limit To All Plant Sequences

>Glyma14g18300.1   sequence type=predicted peptide   gene model=Glyma14g18300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIQLHRTFFSTTTSSVPSSYPLSLGHFMLQFRALQAPPIALAPHATSSLIGATVQCRTRLLFPRRVTAKCHATSFSNFRFPFALNSTTSFGGSVFSRGFATRAAENGKQKKRARAAVVRGKEKDEGVINDAAPKEFDNVTASEGSLGEKKKNKKGSSPVAASGKEDEKSVKKKTAKKKTTTTLRSKKVAASSTQEDGAAEASKKSYKGKKKKDSKKSLTESAIEEMPENSASAKDELKKKNGNSSVIEEVKPPWNFTYKPLYPPTRKSVVVVESVTKAKVIKRYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPPPAWTHLKSIKVALSRAENLILASDPDREGEAIAWHIIEMLQQQGALHDNISLARVVFHEITEKSIKGALQTPREIDVNLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPKEYWTVEVQMKKKELRSNKNLTFPAHLTHFDSKKLNKFSITSDTEARDIRSNINSADFHVVSLKKNKSRRNPPTPYITSTLQQDAANKLHFTASHTMKLAQKLYEGVELSDSVAVGLITYIRTDGLHISDEAVASIRSLIIERYGQDFVSQSAPKYYKKVKNAQEAHEAIRPTDIRKLPSMLSAILDEESLKLYTLIWSRTVSCQMEPAVFEQIQLDIGNLDESIILQSSISRVEFPGYRAVFTDIVSEAVQDKGSDESSHDQTFGVLNSLKTGDSLHVVQTEPNQHHTQPPPRYSEASLVKKLEELGIGRPSTYASTIKVLQDRNYVTVKSRVLSPEFRGRMVSAFLSNHFSEVTDYSFTADMETELDNVSAGLTEWKGLLRDYWTRFKSYCERTSNVHIHQVEKMLEKKFGDYLFASLPDQSRVCPSCMEGTLIFKVSRFGAGYFIGCDQHPRCKYIAKTLYGTEEEEDASQPNTRIEEPKLLGVTSGSNEKVLLKSGPYGVYVQLGEDRKGYIPRRASVSHIKDVDSITLKDALEVLQYPLTLGNHPKDGQPVILRLARAGFCVRHRRTIASIPKNVKPSDVTLEKALEYLSGDDVRRSGRPKKGKSKVEVEVIEAF*

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