SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G31590 | AT | Annotation by Michelle Graham. TAIR10: Cellulose-synthase-like C5 | chr4:15309889-15312336 REVERSE LENGTH=692 | SoyBase | E_val: 0 | ISS |
| GO:0042546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016759 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cellulose synthase activity | SoyBase | N/A | ISS |
| PTHR10587 | Panther | N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED | JGI | ISS | |
| PTHR10587:SF18 | Panther | N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED | JGI | ISS | |
| PF00535 | PFAM | Glycosyl transferase family 2 | JGI | ISS | |
| UniRef100_B9RNP7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9RNP7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M9U6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9U6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g18140 not represented in the dataset |
Glyma14g18140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g136900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g18140.1 sequence type=CDS gene model=Glyma14g18140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCAAGCTTTGATTTTTCCAATAGGTGGATGAAGGAGACCCAGAAGGGTACCCCAGTTGTGGTGACAATGGAGAACCCCACTTTCTCGGTTGTGGAGATTAATGGTGCTGATGCTGCATTCAGGCCAGTGGAGAAGACCCGCGGCAAGAATGCTAAGCAAGTCACATGGTTCTTGTTTCTCAAGGCTTACCATGCTATTGGTTGTGTAACTTGGTTTGCCACAGTTTTGTGGTCTTTGATGGGAGCTATAAGGAAGAGGTTGATTGATAGGGAGGGTGTGACCTTGGAGAGTGAGAAAATGGAAAAGGGGAAGGTGCTGTTTACGGTCATCAAGGTGTTCCTTGTGAGTTCTTTGGTGGTTCTGGTGTTTGAGGTGGTGGTTTATTTGCAAGGTTGGCATTTTGGGAATCCCAGTGTGCACATTCCTCGTGCCGCAGATTTGGAAGGCTTGATGCACTTGGTTTATGTTGCGTGGCTGAGGTTTCGTGGCGAGTACATTGCTCCACCAATGCAGGCACTTTCAAAGTTTTGTATTGTTCTGTTTCTTATACAGTCAGTGGACCGTATGGTGCTTTGCTTTGGGTGCTTTTGGATAAAGTACAAGCGGATTAAGCCTAAGATTGATGGGGATGCCCTCAAGGTTGATGATATTGAAGGATCTGCGTGTAGCCATCCAATGGTTCTGGTTCAGATTCCCATGTGTAACGAGAGGGAGGTGTATGAGCAGTCTATTTCTGCAGTATGCCAAATTGATTGGCCAAGGGACCGTTTACTCATTCAAGTACTTGATGATTCTGATGATGAGAGCATACAGTGGTTAATTAAGACTGAGGTCAGAAAATGGAGCCAAAAGGGAATCAACATAATCTACAGGTATCGCTTAGTCCGGACTGGATATAAAGCAGGGAATCTCAAGTCTGCAATGAGCTGTGACTATGTGAAAGACTATGAGTTTGTTGCAATTTTTGACGCAGATTTCCAACCACATCCTGATTTTCTTAAGCAAACTGTGCCGTATTTCAAGGACAATCCCGAATTAGGTCTTGTCCAAGCTAGATGGGCTTTTGTGAACAAGGATGAGAACTTGTTGACACGTCTCCAGAACATTAACTTATGCTTCCATTTTGAAGTAGAACAGCAGGTCAATGGGGCATTTCTCAACTTTTTTGGATTTAATGGAACTGCTGGTGTTTGGAGAATCAAGGCCCTGGAAGAGTCCGGTGGCTGGCTTGAGAGGACAACCGTAGAAGATATGGATATTGCCGTCCGAGCTCATCTCAATGGCTGGAAATTTATCTTTGTAAATGATGTAAAGGTACTTTGTGAAGTTCCAGAGTCCTATGAAGCTTATAGGAAGCAGCAGCACCGGTGGCACTCGGGTCCAATGCAACTTTTCAGATTGTGTCTTCCAGCAATTTTGAGATCTAAGATATCACCATGGAAGAAAGGGAATTTAATACTGCTATTCTTTCTGTTGAGAAAACTCATTCTTCCCTTTTACTCCTTCACCTTATTTTGCATAATTCTTCCTTTAACTATGTTTGTCCCAGAGGCCGAGCTTCCTCTATGGGTGATCTGCTATATACCTGTATTTATGTCATTCCTCAACATTCTTCCTGCCCCGAAATATTTTCCTTTTCTAGTTCCATACCTTCTTTTTGAAAACACCATGTCTGTCACCAAATTCAATGCCATGATCTCTGGACTCTTCCAATTAGGTAGTTCTTATGAATGGATTGTCACAAAGAAGGCTGGCAGGTCATCAGAGTCTGATTTGGTGGCGGCTGCAGAAAGGGAAGTCAAGTCAATAATGGAACAACAAAAGATCCATAGAGGAGCTTCTGACAGTGTACTTGTTGAGTCTAACCAATGTAAGGAACATAAAGAAACAAATGGAACACCTGTTAAGAAAGCTAACAAAATATATAAGAAAGAGTTGACTTTGGCATTGCTCCTTCTCACAGCTTCTGTCAGGAGTTTGTTGTCTGCACAAGGAGTTCACTTTTACTATCTTCTTTTCCAAGGAGTGACTTTCCTCCTTGTTGGTCTTGATCTGATTGGGCAGCAGATGAGCTAG
>Glyma14g18140.1 sequence type=predicted peptide gene model=Glyma14g18140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPSFDFSNRWMKETQKGTPVVVTMENPTFSVVEINGADAAFRPVEKTRGKNAKQVTWFLFLKAYHAIGCVTWFATVLWSLMGAIRKRLIDREGVTLESEKMEKGKVLFTVIKVFLVSSLVVLVFEVVVYLQGWHFGNPSVHIPRAADLEGLMHLVYVAWLRFRGEYIAPPMQALSKFCIVLFLIQSVDRMVLCFGCFWIKYKRIKPKIDGDALKVDDIEGSACSHPMVLVQIPMCNEREVYEQSISAVCQIDWPRDRLLIQVLDDSDDESIQWLIKTEVRKWSQKGINIIYRYRLVRTGYKAGNLKSAMSCDYVKDYEFVAIFDADFQPHPDFLKQTVPYFKDNPELGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGAFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFVNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAILRSKISPWKKGNLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPLWVICYIPVFMSFLNILPAPKYFPFLVPYLLFENTMSVTKFNAMISGLFQLGSSYEWIVTKKAGRSSESDLVAAAEREVKSIMEQQKIHRGASDSVLVESNQCKEHKETNGTPVKKANKIYKKELTLALLLLTASVRSLLSAQGVHFYYLLFQGVTFLLVGLDLIGQQMS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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