Glyma14g17930 - SoyBase

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Report for Sequence Feature Glyma14g17930

Feature Type:	gene_model
Chromosome:	Gm14
Start:	20040013
stop:	20043784
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g17930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31580	AT	Annotation by Michelle Graham. TAIR10: serine/arginine-rich 22 \| chr4:15306983-15308064 FORWARD LENGTH=200	SoyBase	E_val: 3.00E-68	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0008380	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0016607	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear speck	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0107	KOG	Alternative splicing factor SRp20/9G8 (RRM superfamily)	JGI		ISS
PTHR10548	Panther	ARGININE/SERINE-RICH SPLICING FACTOR	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
PF00098	PFAM	Zinc knuckle	JGI		ISS
UniRef100_B9RNP5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9RNP5_RICCO	SoyBase	E_val: 5.00E-70	ISS
UniRef100_I1M9U2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M9U2_SOYBN	SoyBase	E_val: 1.00E-117	ISS

Expression Patterns of Glyma14g17930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g17930 not represented in the dataset	Glyma14g17930 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g17930

Paralog	Evidence	Comments
Glyma17g29080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g17930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g136700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g17930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g17930

Limit To All Plant Sequences

>Glyma14g17930.2   sequence type=transcript   gene model=Glyma14g17930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAAAAATCTTTTTGAGTTTAAACACTCTTAAAAAAACAAATAAAATTTAAACAAATGTGCGTGACAGATATCAATTTTCCCATATTATTCACAGAAAGGAAAAAAGGGCCCTATAAAACTAAACGCTCCCCTTCTCGAAGAGGCCGCTCGCTCTCTAGGGTTTTTCTTTTTCTCTTCTCACTGCATCGCTTCAGGTTCTTCTGAAAAGATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTCACCGAGAGAGATCTCGAAGACGAATTCCGCGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGACGCACAGGATGCTATCCGTGAATTGGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGTGGTCGTGGTGGTCGCTCTGGTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGCCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCGTGGACGTAGCTACAGCAGGTCTCCTCCTTATCGTGGGCGTGAGGAGGTTCCTTATGCTAATGGAAATGGCCTTAGGGAACGACGCAGAAGCAGAAGTTGATTTTGAGAGTTTGGTATTGGGTATCTGTGATTGTTAAGAGAATAGTGAGATTTTGTTAATTTAGTGGTGCTTTGACTGAAGTATGAGTCTGTTTTGTTGGGCAAGGCCCTGAGTTTCTACTCTTGGATTGGAATAGTTAGTTTATTTTATGTCTCAGCTTGTGTTGAATTTATCTTTGCTTGTAGTTTCATTGCAGGTAATGATCTTGTTAAGGTTGTTGTTACTAGTTTGTTAAATATAGTTCCAGATCTTTCTGCACTACATTAATATGCTTTCCTTCTCTGTTGAGATTTCTTCTGGTACTGT

>Glyma14g17930.3   sequence type=transcript   gene model=Glyma14g17930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAAAAATCTTTTTGAGTTTAAACACTCTTAAAAAAACAAATAAAATTTAAACAAATGTGCGTGACAGATATCAATTTTCCCATATTATTCACAGAAAGGAAAAAAGGGCCCTATAAAACTAAACGCTCCCCTTCTCGAAGAGGCCGCTCGCTCTCTAGGGTTTTTCTTTTTCTCTTCTCACTGCATCGCTTCAGGTTCTTCTGAAAAGATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTCACCGAGAGAGATCTCGAAGACGAATTCCGCGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGACGCACAGGATGCTATCCGTGAATTGGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGTGGTCGTGGTGGTCGCTCTGGTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGCCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCGTGGACGTAGCTACAGCAGGTCTCCTCCTTATCGTGGGCGTGAGGAGGTTCCTTATGCTAATGGCAAAGGACGGAAGAATATTAGGCATGATGAGTGATGACTGGAGTAGAAATGGCCTTAGGGAACGACGCAGAAGCAGAAGTTGATTTTGAGAGTTTGGTATTGGGTATCTGTGATTGTTAAGAGAATAGTGAGATTTTGTTAATTTAGTGGTGCTTTGACTGAAGTATGAGTCTGTTTTGTTGGGCAAGGCCCTGAGTTTCTACTCTTGGATTGGAATAGTTAGTTTATTTTATGTCTCAGCTTGTGTTGAATTTATCTTTGCTTGTAGTTTCATTGCAGGTAATGATCTTGTTAAGGTTGTTGTTACTAGTTTGTTAAATATAGTTCCAGATCTTTCTGCACTACATTAATATGCTTTCCTTCTCTGTTGAGATTTCTTCTGGTA

>Glyma14g17930.4   sequence type=transcript   gene model=Glyma14g17930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAAAAATCTTTTTGAGTTTAAACACTCTTAAAAAAACAAATAAAATTTAAACAAATGTGCGTGACAGATATCAATTTTCCCATATTATTCACAGAAAGGAAAAAAGGGCCCTATAAAACTAAACGCTCCCCTTCTCGAAGAGGCCGCTCGCTCTCTAGGGTTTTTCTTTTTCTCTTCTCACTGCATCGCTTCAGGTTCTTCTGAAAAGATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTCACCGAGAGAGATCTCGAAGACGAATTCCGCGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGACGCACAGGATGCTATCCGTGAATTGGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGTGGTCGTGGTGGTCGCTCTGGTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGCCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCGTGGACGTAGCTACAGCAGGTCTCCTCCTTATCGTGGGCGTGAGGAGGTTCCTTATGCTAATGGCAAAGGACGGAAGAATATTAGGCATGATGAGTGATGACTGGAGTAGAAATGGCCTTAGGGAACGACGCAGAAGCAGAAGTTGATTTTGAGAGTTTGGTATTGGGTATCTGTGATTGTTAAGAGAATAGTGAGATTTTGTTAATTTAGTGGTGCTTTGACTGAAGTATGAGTCTGTTTTGTTGGGCAAGGCCCTGAGTTTCTACTCTTGGATTGGAATAGTTAGTTTATTTTATGTCTCAGCTTGTGTTGAATTTATCTTTGCTTGTAGTTTCATTGCAGGTAATGATCTTGTTAAGGTTGTTGTTACTAGTTTGTTAAATATAGTTCCAGATCTTTCTGCACTACATTAATATGCTTTCCTTCTCTGTTGAGATTTCTTCTGGTA

Coding sequences of Glyma14g17930

Limit To All Plant Sequences

>Glyma14g17930.1   sequence type=CDS   gene model=Glyma14g17930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTCACCGAGAGAGATCTCGAAGACGAATTCCGCGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGACGCACAGGATGCTATCCGTGAATTGGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGTGGTCGTGGTGGTCGCTCTGGTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGCCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCGTGGACGTAGCTACAGCAGGTCTCCTCCTTATCGTGGGCGTGAGGAGGTTCCTTATGCTAATGGAAATGGCCTTAGGGAACGACGCAGAAGCAGAAGTTGA

>Glyma14g17930.2   sequence type=CDS   gene model=Glyma14g17930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTCACCGAGAGAGATCTCGAAGACGAATTCCGCGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGACGCACAGGATGCTATCCGTGAATTGGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGTGGTCGTGGTGGTCGCTCTGGTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGCCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCGTGGACGTAGCTACAGCAGGTCTCCTCCTTATCGTGGGCGTGAGGAGGTTCCTTATGCTAATGGAAATGGCCTTAGGGAACGACGCAGAAGCAGAAGTTGA

>Glyma14g17930.3   sequence type=CDS   gene model=Glyma14g17930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTCACCGAGAGAGATCTCGAAGACGAATTCCGCGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGACGCACAGGATGCTATCCGTGAATTGGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGTGGTCGTGGTGGTCGCTCTGGTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGCCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCGTGGACGTAGCTACAGCAGGTCTCCTCCTTATCGTGGGCGTGAGGAGGTTCCTTATGCTAATGGCAAAGGACGGAAGAATATTAGGCATGATGAGTGA

>Glyma14g17930.4   sequence type=CDS   gene model=Glyma14g17930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTCACCGAGAGAGATCTCGAAGACGAATTCCGCGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGACGCACAGGATGCTATCCGTGAATTGGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGTGGTCGTGGTGGTCGCTCTGGTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGCCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGTCCTCGTGGGCGGTCCCCTAGGCACCGCAGTTTGTCACCTCGTGGACGTAGCTACAGCAGGTCTCCTCCTTATCGTGGGCGTGAGGAGGTTCCTTATGCTAATGGCAAAGGACGGAAGAATATTAGGCATGATGAGTGA

Predicted protein sequences of Glyma14g17930

Limit To All Plant Sequences

>Glyma14g17930.1   sequence type=predicted peptide   gene model=Glyma14g17930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRHRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS*

>Glyma14g17930.2   sequence type=predicted peptide   gene model=Glyma14g17930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRSPRGRSPRHRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS*

>Glyma14g17930.3   sequence type=predicted peptide   gene model=Glyma14g17930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRHRSLSPRGRSYSRSPPYRGREEVPYANGKGRKNIRHDE*

>Glyma14g17930.4   sequence type=predicted peptide   gene model=Glyma14g17930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRSPRGRSPRHRSLSPRGRSYSRSPPYRGREEVPYANGKGRKNIRHDE*

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