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Report for Sequence Feature Glyma14g17750

Feature Type:gene_model
Chromosome:Gm14
Start:19698498
stop:19701568
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g17750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19820AT Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116 SoyBaseE_val: 1.00E-128ISS
GO:0009165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0052541GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process SoyBaseN/AISS
GO:0052546GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0030089GO-cc Annotation by Michelle Graham. GO Cellular Compartment: phycobilisome SoyBaseN/AISS
GO:0016829GO-mf Annotation by Michelle Graham. GO Molecular Function: lyase activity SoyBaseN/AISS
PTHR10527Panther IMPORTIN BETA JGI ISS
PTHR10527:SF5Panther IMPORTIN BETA-1 JGI ISS
PF02985PFAM HEAT repeat JGI ISS
UniRef100_A2Q1G7UniRef Annotation by Michelle Graham. Most informative UniRef hit: HEAT n=1 Tax=Medicago truncatula RepID=A2Q1G7_MEDTR SoyBaseE_val: 1.00E-154ISS
UniRef100_UPI000233E18CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E18C related cluster n=1 Tax=unknown RepID=UPI000233E18C SoyBaseE_val: 3.00E-163ISS

Expression Patterns of Glyma14g17750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g17750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g135600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g17750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g17750
>Glyma14g17750.1   sequence type=CDS   gene model=Glyma14g17750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTATGATAAAGAATCTGGAGCAGGTATTGTCAATGATTTTGAATTCATTTTGTGATCCTCACCCTCGAGTGCGATGGGCAGCTATAAATGCAATTGGGCAGTTGTCCACGGATTTGGGGCCAGACTTGCAGGTTAAATTTCACCACTTAGTGCTTCCGGCTTTGGCTGGAGCCATGGATGATTTTCAAAATCCAAGAGTACATGCCCATGCTGCTTCTGCAGTGCTAAATTTCACTGAGAATTGTACCCCAGATATCCTAACACGTTACTTAGATGGGATAGTGAGCAAACTTTTGGTACTCCTACAGAATGGGAAGCAAATGGTTCAAGAAGGGGCTTTGACAGCCTTAGCATCTGTTGCAGATTCTTCAGAGGTGCAATTTCAGAAGTATTATGACGCTGTGATGCCATACTTAAAAGCTATTTTGGTGAACGCAAATGATAAATCTAATCGTATGCTTCGAGCCAAAGCAATGGAGTGCATTAGTTTGGTAGGAATGGCCGTTGGAAAGGAGAAGTTCAGGGATGATGCCAAACAGGTCATGGATGTCTTGATGTCACTGCAACAATCTCAACTGGATGTTGATGATCCAACTGCAAGTTACATGTTACAATGCCTTGGGCAGGATTTTCTCCCATATATGGGTTTTGTGATGCCTCCTTTGCTCCAGTCTGCACAACTTAAGCCCAATGTGACCATTATTACATCAGCGGATTCTGATACTGAATTTGATGAAGATGATGACAGAAAAAAGGGAATAAGCATAGAGGAAAAGGGAGTTGCAATTTTTAGATCTGAAAATGAAGAAGAAGTAGATATGGATTATACCGATGGATATTTTGGTTTTGTTTTTAAATACTTTTCTTCAATGAGGTCCTTTAATGGTGATTTTCCACCCTCGAGATGCAGTGGAAGACAAAGGAGAAGA
Predicted protein sequences of Glyma14g17750
>Glyma14g17750.1   sequence type=predicted peptide   gene model=Glyma14g17750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VMIKNLEQVLSMILNSFCDPHPRVRWAAINAIGQLSTDLGPDLQVKFHHLVLPALAGAMDDFQNPRVHAHAASAVLNFTENCTPDILTRYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSEVQFQKYYDAVMPYLKAILVNANDKSNRMLRAKAMECISLVGMAVGKEKFRDDAKQVMDVLMSLQQSQLDVDDPTASYMLQCLGQDFLPYMGFVMPPLLQSAQLKPNVTIITSADSDTEFDEDDDRKKGISIEEKGVAIFRSENEEEVDMDYTDGYFGFVFKYFSSMRSFNGDFPPSRCSGRQRRR






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