SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G64750 | AT | Annotation by Michelle Graham. TAIR10: deletion of SUV3 suppressor 1(I) | chr1:24052787-24053712 REVERSE LENGTH=74 | SoyBase | E_val: 5.00E-12 | ISS |
| GO:0006302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010212 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ionizing radiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF05160 | PFAM | DSS1/SEM1 family | JGI | ISS | |
| UniRef100_C6SVB5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVB5_SOYBN | SoyBase | E_val: 1.00E-40 | ISS |
| UniRef100_D2XQ35 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Deleted in split hand/splt foot protein 1 n=1 Tax=Ipomoea batatas RepID=D2XQ35_IPOBA | SoyBase | E_val: 1.00E-13 | ISS |
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Glyma14g17380 not represented in the dataset |
Glyma14g17380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g134200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g17380.4 sequence type=transcript gene model=Glyma14g17380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAACTTTTCCTCACAGACACGCACGCTGCTTGATTCAAAAGTAGTACATACAAGATTCTTCGCTCATAGGGTTTATACTCCAACATCATCTATAATTCAGGTTTTTCCATGGCGACCGAACCCAAAGCAGTCACTGAGGACGTCAAGATCGATCTCTTCGAAGACGATGATGAGTTTGAAGAGTTTGAAATCAATGAAGAGTGGGATGACAAAGAGGAAGGAAAAGAAGTGACTCAGCAGTGGGAGGATGATTGGGATGATGATGATGTTAGTGATGATTTCTCTCTCCAGTTGAAAAGGGAGTTGGAGAGCAACACTAATAAGAATTAAATCACCTGCTAGTTATTATTGCTTGATATAACATGTTATATGACTTGGGTGTTTAAGCTCTAGGAAGGAAATGAAAATTATGCCTTGTTAGGAAGGAAATGTAAGACTGTAAGAACAGAATAGGGACAGTATTTCTGTTCTTGAATATCTGCATAGAAGTTAATGAGTGCTTGTACTTAAATTGAATTATGTACAAGGCTTTAAGATTTGATTTACAATCTCAAATTA >Glyma14g17380.5 sequence type=transcript gene model=Glyma14g17380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAACTTTTCCTCACAGACACGCACGCTGCTTGATTCAAAAGTAGTACATACAAGATTCTTCGCTCATAGGGTTTATACTCCAACATCATCTGTCTTTGAAATAACCACAGATAATTCAGGTTTTTCCATGGCGACCGAACCCAAAGCAGTCACTGAGGACGTCAAGATCGATCTCTTCGAAGACGATGATGAGTTTGAAGAGTTTGAAATCAATGAAGAGTGGGATGACAAAGAGGAAGGAAAAGAAGTGACTCAGCAGTGGGAGGATGATTGGGATGATGATGATGTTAGTGATGATTTCTCTCTCCAGTTGAAAAGGGAGTTGGAGAGCAACACTAATAAGAATTAAATCACCTGCTAGTTATTATTGCTTGATATAACATGTTATATGACTTGGGTGTTTAAGCTCTAGGAAGGAAATGAAAATTATGCCTTGTTAGGAAGGAAATGTAAGACTGTAAGAACAGAATAGGGACAGTATTTCTGTTCTTGAATATCTGCATAGAAGTTAATGAGTGCTTGTACTTAAATTGAATTATGTACAAGGCTTTAAGATTTGATTTACAATCTCAAATTATTTGCATTATTTTCATTTTGGGGTTGGGTGGGTGTGCTTT
>Glyma14g17380.2 sequence type=CDS gene model=Glyma14g17380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACCGAACCCAAAGCAGTCACTGAGGACGTCAAGATCGATCTCTTCGAAGACGATGATGAGTTTGAAGAGTTTGAAATCAATGAAGAGTGGGATGACAAAGAGGAAGGAAAAGAAGTGACTCAGCAGTGGGAGGATGATTGGGATGATGATGATGTTAGTGATGATTTCTCTCTCCAGTTGAAAAGGGAGTTGGAGAGCAACACTAATAAGAATTAA >Glyma14g17380.4 sequence type=CDS gene model=Glyma14g17380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACCGAACCCAAAGCAGTCACTGAGGACGTCAAGATCGATCTCTTCGAAGACGATGATGAGTTTGAAGAGTTTGAAATCAATGAAGAGTGGGATGACAAAGAGGAAGGAAAAGAAGTGACTCAGCAGTGGGAGGATGATTGGGATGATGATGATGTTAGTGATGATTTCTCTCTCCAGTTGAAAAGGGAGTTGGAGAGCAACACTAATAAGAATTAA >Glyma14g17380.5 sequence type=CDS gene model=Glyma14g17380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACCGAACCCAAAGCAGTCACTGAGGACGTCAAGATCGATCTCTTCGAAGACGATGATGAGTTTGAAGAGTTTGAAATCAATGAAGAGTGGGATGACAAAGAGGAAGGAAAAGAAGTGACTCAGCAGTGGGAGGATGATTGGGATGATGATGATGTTAGTGATGATTTCTCTCTCCAGTTGAAAAGGGAGTTGGAGAGCAACACTAATAAGAATTAA
>Glyma14g17380.2 sequence type=predicted peptide gene model=Glyma14g17380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATEPKAVTEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSLQLKRELESNTNKN* >Glyma14g17380.4 sequence type=predicted peptide gene model=Glyma14g17380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATEPKAVTEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSLQLKRELESNTNKN* >Glyma14g17380.5 sequence type=predicted peptide gene model=Glyma14g17380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATEPKAVTEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSLQLKRELESNTNKN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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