SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G53860 | AT | Annotation by Michelle Graham. TAIR10: embryo defective 2737 | chr5:21865353-21868576 FORWARD LENGTH=402 | SoyBase | E_val: 2.00E-61 | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_F4JYR1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein embryo defective 2737 n=1 Tax=Arabidopsis thaliana RepID=F4JYR1_ARATH | SoyBase | E_val: 9.00E-59 | ISS |
| UniRef100_UPI000233C10F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C10F related cluster n=1 Tax=unknown RepID=UPI000233C10F | SoyBase | E_val: 9.00E-88 | ISS |
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Glyma14g17291 not represented in the dataset |
Glyma14g17291 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g133500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g17291.2 sequence type=transcript gene model=Glyma14g17291 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGGTTGAAACTATGACATCTTAATTTTTATATAGTTTCCTCTGGAGTAGATTTTGCAGTTTTATTTTAGATTTTTCGGTTATCACAGGCCTTGATATCTATTGATCCTGCCCGTGCAAGGGATGATCCTGTCATAGTGAAAAATGTCCCTTACTATAAGGCTAAGAAGGCTCTGGAGACCGAGGTTATGAAGATTGATCCTCCACCAAGACCGCCAAATTGCGGTGAGCTTGACCTTCCATTGAATGCATCATCTTGGAGTGAGGAGGATCTCAAAGATCCAGATAAGTTCTATGAAATGATTGCTCTTCTTAATGCCCAAAGAGAAATCTCTGATAAGATCTTGGATGCACAGTGGGAAACTAAATGGCGTCAGGACAAGTTGAATGAGATGTTGGAGGCAAAGGTGAAGCCATACATTCAGGATATAGACAATGTAGTTCTTCCTGAGCCTATTTTATTAAAGCCACAAAATCAGGAAAAGGTCTTTCTTTCTCTGTGTTTTTCCTGGGTTTAG
>Glyma14g17291.1 sequence type=CDS gene model=Glyma14g17291 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCTACACTACCAGTGTGGGCTCATGCCTTGATATCTATTGATCCTGCCCGTGCAAGGGATGATCCTGTCATAGTGAAAAATGTCCCTTACTATAAGGCTAAGAAGGCTCTGGAGACCGAGGTTATGAAGATTGATCCTCCACCAAGACCGCCAAATTGCGGTGAGCTTGACCTTCCATTGAATGCATCATCTTGGAGTGAGGAGGATCTCAAAGATCCAGATAAGTTCTATGAAATGATTGCTCTTCTTAATGCCCAAAGAGAAATCTCTGATAAGATCTTGGATGCACAGTGGGAAACTAAATGGCGTCAGGACAAGTTGAATGAGATGTTGGAGGCAAAGGTGAAGCCATACATTCAGGATATAGACAATGTAGTTCTTCCTGAGCCTATTTTATTAAAGCCACAAAATCAGGAAAAGGTCTTTCTTTCTCTGTGTTTTTCCTGGGTTTAG >Glyma14g17291.2 sequence type=CDS gene model=Glyma14g17291 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGATTGATCCTCCACCAAGACCGCCAAATTGCGGTGAGCTTGACCTTCCATTGAATGCATCATCTTGGAGTGAGGAGGATCTCAAAGATCCAGATAAGTTCTATGAAATGATTGCTCTTCTTAATGCCCAAAGAGAAATCTCTGATAAGATCTTGGATGCACAGTGGGAAACTAAATGGCGTCAGGACAAGTTGAATGAGATGTTGGAGGCAAAGGTGAAGCCATACATTCAGGATATAGACAATGTAGTTCTTCCTGAGCCTATTTTATTAAAGCCACAAAATCAGGAAAAGGTCTTTCTTTCTCTGTGTTTTTCCTGGGTTTAG
>Glyma14g17291.1 sequence type=predicted peptide gene model=Glyma14g17291 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPTLPVWAHALISIDPARARDDPVIVKNVPYYKAKKALETEVMKIDPPPRPPNCGELDLPLNASSWSEEDLKDPDKFYEMIALLNAQREISDKILDAQWETKWRQDKLNEMLEAKVKPYIQDIDNVVLPEPILLKPQNQEKVFLSLCFSWV* >Glyma14g17291.2 sequence type=predicted peptide gene model=Glyma14g17291 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKIDPPPRPPNCGELDLPLNASSWSEEDLKDPDKFYEMIALLNAQREISDKILDAQWETKWRQDKLNEMLEAKVKPYIQDIDNVVLPEPILLKPQNQEKVFLSLCFSWV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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