Glyma14g17200 - SoyBase

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Report for Sequence Feature Glyma14g17200

Feature Type:	gene_model
Chromosome:	Gm14
Start:	18833913
stop:	18835163
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g17200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24450	AT	Annotation by Michelle Graham. TAIR10: FASCICLIN-like arabinogalactan protein 3 precursor \| chr2:10393019-10393861 REVERSE LENGTH=280	SoyBase	E_val: 2.00E-47	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02469	PFAM	Fasciclin domain	JGI		ISS
UniRef100_G7JCC6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fasciclin-like arabinogalactan protein n=1 Tax=Medicago truncatula RepID=G7JCC6_MEDTR	SoyBase	E_val: 7.00E-50	ISS
UniRef100_UPI000233C10D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C10D related cluster n=1 Tax=unknown RepID=UPI000233C10D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g17200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g17200

Paralog	Evidence	Comments
Glyma17g29710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g17200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g133200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g17200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g17200

Limit To All Plant Sequences

>Glyma14g17200.2   sequence type=CDS   gene model=Glyma14g17200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCAAAAGCTCTTCTCTTCTATGCCTAGCTCTTTTGCTTGCATGCTCTTCGGCTATTCATGCCTTTGACATCACACAACTGCTAGGCCAATATCCAGAGTTTTCCACATTCAACAAATACCTAACGGAAACCAAGCTCGCAGACGAAATCAACAGCCGCAACACCATCACTGTCCTCGCCGTTGAAGACTCAGCCATGAATTCCATTGCTGCCAAGTCCCCAGAAGCCATTAAGGCCATCATTAGCACCCATGTCATCCTTGACTTCTTTGATGAGAAGAAGCTCATGGAAGCTCAAGCTAATAGCCAACAGTTGACAACCCTATTCCAGGCCTCAGGCATTGCAGTGAACCAACAAGGCTTCCTCAAGGTTGCACTCGTCGGCGAAGGCGAGATCGCCTTCGGCTCGGCCGTGAGTGGCGCCCCAGTCGACGCCACCGAGCTCATGAGGACCGTCACCAGCGAGCCCTACAACATCTCCATTCTCCAAGTCACCAAACCCATCCTAGTCCCAGGTGTTGATTCACAAACCCCAGCCTCATCATCTGGTGCACAATCCTCACAAGGAGCCAATGCTCCCGTTGCTGCACAGGGTGCCAAAGCTCCTATGTCATCATTACAAGGTGCCAAGGCACCCATTCCGACACCGGTTGCAAAGTCACCTGTGCCAGCACAGAGTGCCAAGGCACCAGTTCCTTCGAAGACTGCGGCCGCATCTCCACCTACTGGTGAAAGCGTTGCCGAGTCTCCGGAGGTTGCTGCTGAAGCCCCAGCAACGAGCCCAACTGGAGCTGAGGCTCCAGGTCCCATGGCTGATGATGTTACTCCTGCTGATGTTCCTAGCAGTGCTTCAACCACAAAGATGGGTTTGGTTGGCGCAGTGATGGCCTTTGCTTCCCTCTTCATTGTTCTATAA

Predicted protein sequences of Glyma14g17200

Limit To All Plant Sequences

>Glyma14g17200.2   sequence type=predicted peptide   gene model=Glyma14g17200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFKSSSLLCLALLLACSSAIHAFDITQLLGQYPEFSTFNKYLTETKLADEINSRNTITVLAVEDSAMNSIAAKSPEAIKAIISTHVILDFFDEKKLMEAQANSQQLTTLFQASGIAVNQQGFLKVALVGEGEIAFGSAVSGAPVDATELMRTVTSEPYNISILQVTKPILVPGVDSQTPASSSGAQSSQGANAPVAAQGAKAPMSSLQGAKAPIPTPVAKSPVPAQSAKAPVPSKTAAASPPTGESVAESPEVAAEAPATSPTGAEAPGPMADDVTPADVPSSASTTKMGLVGAVMAFASLFIVL*

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