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Report for Sequence Feature Glyma14g17070

Feature Type:gene_model
Chromosome:Gm14
Start:18592521
stop:18602596
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G49600AT Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 26 | chr3:18380942-18386662 REVERSE LENGTH=1067 SoyBaseE_val: 0ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009880GO-bp Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010072GO-bp Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010431GO-bp Annotation by Michelle Graham. GO Biological Process: seed maturation SoyBaseN/AISS
GO:0010564GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0045595GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation SoyBaseN/AISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0004221GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity SoyBaseN/AISS
GO:0004843GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity SoyBaseN/AISS
KOG1863 KOG Ubiquitin carboxyl-terminal hydrolase JGI ISS
PTHR24006Panther FAMILY NOT NAMED JGI ISS
PTHR24006:SF163Panther SUBFAMILY NOT NAMED JGI ISS
PF00443PFAM Ubiquitin carboxyl-terminal hydrolase JGI ISS
UniRef100_I1M9Q7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Glycine max RepID=I1M9Q7_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI000233C10AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C10A related cluster n=1 Tax=unknown RepID=UPI000233C10A SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g17070 not represented in the dataset

Glyma14g17070 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma17g29610 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g132500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma14g17070.1   sequence type=CDS   gene model=Glyma14g17070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTAGACCAACAACTCGAAGTAAAAATAAAAGGCAGAGACAGGGGGATGATGATGGTGGTGGCACTTCTGACATATGGAGGAAAATTCACATAACGGGTGCGGTGACTGAAGATGATATGAATCAACTGTATATGATTTGGAAGCCAGTCTGTTCAGGCTGTCGTGTTAATACTAAAGACAACCCGAATTGCTTCTGTGCATTGGTTCCACCTGCGAATGGTACCCGAAAGTCTGGTTTATGGCAGAAGATGGCCGACTTTGTCGAAAGTCTTGGTCCCGACCCAAATATGGATCTTCGTGTTTCTGATAGTTCACCTGCAGGTCTGACAAATCTTGGCGCAACATGCTATGCCAACAGTATACTACAGTGCTTGTATATGAATAAATCTTTCCGAGAAGGCATATTTTCTGTAGAACCGGATGTTTTACAACAACAACCAGTGTTAGATCAACTGACTCAACTTTTTGTACATTTGCATGCTAGTAAAATGGCTTTCATAGATTCTTCTCCATTTGTAAAAACATTGGAGCTAGACAATGGAATTCAGCAGGATAGCCACGAGTTCTTGACATTGCTTCTGTCATTACTTGAGCGTTGTTTGAGCCATTCCAAAATTGCCAAGGCAAGAACAATAGTTCAAGATCTTTTTCGAGGAAGTGTGTCTCATGTGACAACGTGTTCGCAATGTGGAAGAGACTCTGAGGCTTCTTCCAAAATGGAAGACTTCTATGGGTTAGAGTTGAATATCAAGGGACTGAAAGGTTTAGATGAGAGCCTAGATGATTATCTTGCTATTGAAGAGCTTCATGGAGACAATCAATATTTCTGTGAGTCATGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTGTGTACATTGCCTGATGTACTTAATTTTCAACTTAAACGTTATGTCTTCCTTCCACAGAATACAATGAAGAAGAAAGTTACTTCTGCATTTTCATTTCCTGCTGAACTTGATATGCGCCATAGATTGTCTGAGCCATCTCAGTTTGAATTGATATATGACTTGTCAGCTGTACTGATTCACAAAGGAACTGCTGTTAATAGTGGTCATTACATTGCCCATATCAAGGATGTAAACACTGGGCAATGGTGGGAGTTTGATGACGAGAATGTTACTAACTTGGGTTGCCATCCATTTGGGGAAGGAACTTCTTCTACTTCTAAATCTGTTAAGACAGATGTACTTCATTCTAATTGCTCTGAAGCAATGCTAGCTGACAGTAATGGTTTAGATGCCACTCATGCGCAATCTTTGCTTGTGGAGACATTTTCATCTAGTGATGCTTACATGTTGATGTACCATCTTAAGCATAGCAAAAATGTTGGTGAAAAGGGGGGAATCGTTTATGGTGCTAACCTTGAAGTAGAGGGCAATGCAGTTACTGCACAAGACAGTGCTTGTCTTCCTTCTCATTTTTGCAAAGAGATTCAAAATTTCAATGCTTCATATCTTGATTCTTGCGAGCAGTACAAACATAGGAAAGAGTTAGAATTGAGCCATATCAATGAGAGGAGACAGGAAGTTCGATCCATTTTAGCTGAAGCTCCTACTCAACCACTGGAGCAACCGTATTTTTGGATTTGTAGTGACTGGCTTCGCCAGTGGGCTGACAACATTATTCCAATTGCTCTTGACAATACATCTATCCAATGTTCACATGGGAAAGTCCCAGTGTCAAAGGTTACCTCAATGAAGCGATTATCTTCTAAAGCATGGGATAAATTATTGTCTAAGTATGGTGGGGGACCAACTCTTTCTCATGAAGACTGTTGTTGGGATTGTCTGATTGATGGGGCTCAGAATGTGGTGTCAGCTGACACTTATCGGGATCAAAGAGAATCATTGAAGCGACTTGCACGGGATATTCTCGATGGAAATTGTGAAGACGGAATGTACTATGTGTCTAGACCATGGTTGCAGCAATGGTGGAAAAGAAAAGTTGTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAGCAGCCATTTGTTGTCCACATGGGCAACTTATGCCTGAGCAAGCTGTTGGTGCTAAGCGGTTGCTTGTTCCTGAGGATTTCTGGCTTTTCTTATATAAAGATGCCATTTCTGTAAAACCTGATGATCCTCTAGGTTGCCCTACTTTTCCTTTAGACTCCAGAAGGTGTTCCCAATGCAGTGATGAATTATCTGAAGAGGCTTGCTTGGAGGACTCTTTGAGATTAGTAAAACAAATGCAACGCCAAAATCATGAGAAATTATTTGTTGGTAAAAGTATGCCGCTTTCTCTACATTGCAAGTATTTCTTAGTTCCTTCTTCGTGGATTTCAAAATGGAGAAATTACATTAATTTGGCTGTCAAGAATTCAGATAAACCTGAAACTTTAGATGGGGTAATCGATTCACTGATGTGTGAAAAGCATTCACGGCTCATTGAAAGGCCTCCTGAACTGGTTTTCAGACGTGGTGCTATAATTGCCAGAGAATCTTCTGTAAGTGGCTTAACCATCATATCTGAGAATGATTGGAAATGCTTCTGTGAAGAATGGAGTGGTATTGAGACCAAAGGAATATCTGCAAGAATTGAGAATGTTAATGATTCAGAAAATGCTTTGACTGGATCCTGCAGAGAGATGCCAATATGTGAGGATCAACTTAACACTTGGGATAAAGTGAATAATGAAAGTGGGAATGGACACATTGTGATTAAGACTTGTCCTGAGGTTTGTGAAAGTTGCGTTGGAGAAAAGGAAAGCTGTGAGTTAATGCAGAAACTTAACTATTGCAATCAGGACATTAGTGTAATTCTTGTCCGTGGAAAGGAGGTCCCTAAATCAATCTTAGAGGCTTCAAAGGGCTTTGTTGAAATAGACAGGCGGGTTTCCAAACGTTCCCGGAAGACTAAAAATGGGAGTTCCATTAGTCTAAAAGTTTCTGCTTCAACATCTATTTACCAGCTGAAAATGATGATATGGGAATCCTTTGCGGTTGTCAAAGAAAACCAGATACTACAAAAAGGTGATAGAACAATTGATGTTGATAATGAATATGCTACGCTTGTGGATGCAAACATATTTGCTGGAGATCAGATTATTGTGAGGGACTCCGAGATCCATGAAAATCGAGATATTGCAGATGAGCTTTGTGATGAGGAAATGGAAACACAACATACCGAGGCAGGATTTCGTGGAACACTCTTAACATCGAACGTTTCATCTCAGGTGGTTTAG

>Glyma14g17070.1   sequence type=predicted peptide   gene model=Glyma14g17070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRPTTRSKNKRQRQGDDDGGGTSDIWRKIHITGAVTEDDMNQLYMIWKPVCSGCRVNTKDNPNCFCALVPPANGTRKSGLWQKMADFVESLGPDPNMDLRVSDSSPAGLTNLGATCYANSILQCLYMNKSFREGIFSVEPDVLQQQPVLDQLTQLFVHLHASKMAFIDSSPFVKTLELDNGIQQDSHEFLTLLLSLLERCLSHSKIAKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYGLELNIKGLKGLDESLDDYLAIEELHGDNQYFCESCKTRVDATRSIKLCTLPDVLNFQLKRYVFLPQNTMKKKVTSAFSFPAELDMRHRLSEPSQFELIYDLSAVLIHKGTAVNSGHYIAHIKDVNTGQWWEFDDENVTNLGCHPFGEGTSSTSKSVKTDVLHSNCSEAMLADSNGLDATHAQSLLVETFSSSDAYMLMYHLKHSKNVGEKGGIVYGANLEVEGNAVTAQDSACLPSHFCKEIQNFNASYLDSCEQYKHRKELELSHINERRQEVRSILAEAPTQPLEQPYFWICSDWLRQWADNIIPIALDNTSIQCSHGKVPVSKVTSMKRLSSKAWDKLLSKYGGGPTLSHEDCCWDCLIDGAQNVVSADTYRDQRESLKRLARDILDGNCEDGMYYVSRPWLQQWWKRKVVDAPSEADAGPTAAICCPHGQLMPEQAVGAKRLLVPEDFWLFLYKDAISVKPDDPLGCPTFPLDSRRCSQCSDELSEEACLEDSLRLVKQMQRQNHEKLFVGKSMPLSLHCKYFLVPSSWISKWRNYINLAVKNSDKPETLDGVIDSLMCEKHSRLIERPPELVFRRGAIIARESSVSGLTIISENDWKCFCEEWSGIETKGISARIENVNDSENALTGSCREMPICEDQLNTWDKVNNESGNGHIVIKTCPEVCESCVGEKESCELMQKLNYCNQDISVILVRGKEVPKSILEASKGFVEIDRRVSKRSRKTKNGSSISLKVSASTSIYQLKMMIWESFAVVKENQILQKGDRTIDVDNEYATLVDANIFAGDQIIVRDSEIHENRDIADELCDEEMETQHTEAGFRGTLLTSNVSSQVV*







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