SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G49601 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:18387504-18389279 REVERSE LENGTH=591 | SoyBase | E_val: 3.00E-57 | ISS |
| KOG1869 | KOG | Splicing coactivator SRm160/300, subunit SRm300 | JGI | ISS | |
| PF08312 | PFAM | cwf21 | JGI | ISS | |
| UniRef100_Q68F69 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: LOC446275 protein (Fragment) n=1 Tax=Xenopus laevis RepID=Q68F69_XENLA | SoyBase | E_val: 2.00E-23 | ISS |
| UniRef100_UPI000233C107 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C107 related cluster n=1 Tax=unknown RepID=UPI000233C107 | SoyBase | E_val: 0 | ISS |
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Glyma14g16981 not represented in the dataset |
Glyma14g16981 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g18011 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Glyma17g29553 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g131900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g16981.2 sequence type=transcript gene model=Glyma14g16981 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGCGAATAACAAATGTAGATGGGCCAATAGCAATCCCCATTCAAAAACTGGACAAGATTATCATGGCCCATTTATTTTTTATTGTTTGATTTTTCTTTTAGTCTTGTTTTCACTATTCACGCAGCCAATCCCGATTTCTGAAATTGGGAGAAACATTCATTTGAAGGTGACAAGCAGAGCTCTAATATTCGCTACGATTACAAACCCTAATCAGCTCACAGACCTCTCTTTCTCGCGTCTTTGGAGTTTTAATTTCAGTGGATTGATATGTACAACGGAATAGGGTTACAGACCCCAAGAGGGTCGGGTACGAATGGGTACATTCAGGGCAACAAGTTCTTTGTGAAGCCGAAGATTTCAAAGGTTGCTGAGAACACAAAGGGGTTTGAGGCAGATCAGGGCACTGCTGGTGTTACCAGGAAGCCCAACAAAGATATCCTTGAGCATGATCGCAAGCGTCAGATTCAGCTCAAGCTCACCATCCTTGAAGACAAACTTATTGATCAGGGCTACACTGATGCGGAAATCGCTGAAAAACTCATGGAGGCTCGCCTAAATTTGGAAGCCACTGCTGCCACTGAGGAAATAGATGGACCTGCATCTGTATCTGCATCAGATAAGAAGGTTTCAAATACACAGACTCATCAAATTGCTGCTAGGAAGGAAAAGCAGATGGAAGCATTGAAGGCTGCTCTTGGCATAGTCTCGTCTGAAGCCAATGAAAGAAATGCAGATGGGACTGATGAGCTTGGAAATGATGGGGGAAATGGTTCTAATGTGGAGGGTAATTCAAAGCCTGAACATGCCTTTTTGGACAGAGATTTCAGTAAGAAACAAATGGTTGAAGATCAAAAGGATGAAAATACTAAGAAGAAGAGTGTTAAAGATACAAGGCACCACAAGAAGGTTGAAACTCTTAAGAAAAAGTATGAGGATGATTCATCTGATTCAGACAGCAGTTTGTCTGATGAGAAGAGAGGTACAAGGAAGCGTGGTAAAGAGTACACAAGCAGTAGTGATGAATCTGATTCTGATAGTGATGCTAAGAGGAAGGTCAAGGCTGAAAAGAAGCGGAAGATACCTAAGCACCACAAGAAAGGTAGGGTGGAGGATAGTGATGATACCAATTCTTATGATTCTGATGACAGCGATATTGCAAAAAAAAGTTATAAGAAGACAGATAAGTCTCATAGGAGGCATTTTTCGGATGATGATTCTGATGATCATGAAGATGTCTCCAAGCATAAGACTTGGGAAGGGAAGCAACATTCAAAAATGAGAAAACCTCATGATTCTGCGGTGGAATCTGATGTTGATAGGGAGGAAAAAAAATATGGTAGACGTGAGAAGCAGAAGACAAAGAGGCATAGTTCTGATGATGAGGACTCTTATAGAGATGGTGTTAAGCATGCATCAGGTCAAGACAGATATGTTAGAAGGGGGTCATACACTTCCTCTAATGACAGTAGCAGTGACAGTGATTCAGACAGCGATTCTAGTGATCACAGATATGAAAAAACAAAAAAAGGTGGGCCTGTTGTAGCAAAGAAAGGTAAAGGATATGGCAGGGAAGAAAATAAATTCAGAGATGAAGCCAGAGATAGTGGTGCAGAGAAAGGGAAGAATACTGCTAATATTGATGCATTGGACTCTCTTAAAAAGTCATATGGGACAGATTTTGCAAAGGGATCAAATAGTAGAAGTCGAGAAATGACACAAGGTAGCAGCAGGAAAATTGATGGAGACAGAGATAGGGGGGCCGTCACATTGGTCAAGCATAATGAAGATGATAGAAAAACTGAGTCTGAATCTAAATTAGCTAGGCTTGCAGGGCATGATGATGATAGTTCTGAGCAAAGAGGAAGAAATTATAACAAGGATGTTGAATCACATTTTGTTGGTCGAACTGCTCGCTATGGTGAAGATCATGAAACAAGAAGGCATATAAGAGATGATGATAATCATAGGGAGCATGAGCATAGAAGGGATAATGATAACCGTGGAGAAAGAAAGCATGGAAGGGATGAAGATGATCACACAGGAAGAAAGCTTGCAAGGGAAGAGGATGTTGGAGAAAAAAAGCATGTGAAGGATGAGGACGATTCTAAAGAAAAGCACAGAAGGCATGAGGATGGCCATGGAGATTATCGTATAGGAAGAAAGCACTCAAGGGATGAGGATGATCTTGGAGAAAGAAAGCATGCAAGGGATGAGGATGATTCCAAAGGGAAGCACAGAAGGTATGAGGATGACCGTGGAGAGAGAAAGAACTTGAGGGATGAAGATGACGGTGCAGAGAGAAAGCGTGGAAGGGATGAAGATTACCGAACAGGAAGAAAGCAGACAAGGGATGAGAATGAACATAGAGAAAGAAAGTTCAGAAGGGATGAGGATGATCGGGAAGGAAGAAAGTTCAGAAGGGATGAGGATGTTTATGGAGAAAGAAAGAACTTAAGGGATGAGGATGTGCATGGAGAACGAAAGAACTTGAGGGGGGAGGATGATGATAGGGAAAGAAAGCATTCAAAGGATAAAGATGGTCGTGGAGAAAGAAAGCACAGAAGGGATGATGATGATGATGTTAGTCATGAAAGAAAGCAGTGCAGAAGGGATGAAGATGATCGTGAAGAAAGAAAGCAGCACAGAAGGGATGATGATGGTCGTGGAGAGAGAAAGCACAGAAGGGAGGAGGAAGAGCGGGGAAAGAAAGGTTATGAGAGGGAAAGCCGCTCCAAGAGAGCCAGATACTAAGGTTCTCCTTCGAGTGAGGCGTGAAAGTAACTCATGAACTGTGATCCAGGCATATTGAGAATGCTTACTTGCTGCTTTAATATTTGAATTAGATGTGTCAGTTGTCTTATACATTTGCTTTTTAGAGGATGTAATTTGTGTTTGAACTATGTTTAATGCGTGCTTTTTTCAAATTCTGTATTATGTTTTTTTTTTCTACCAAAATTCTTTATTTTGTTGTGACTGGTAGTTTTTTTTAAAAATAAAATACAAAATCTACTGCAGGTGTTGTATATATGCAAGGGTGGAA
>Glyma14g16981.1 sequence type=CDS gene model=Glyma14g16981 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACAACGGAATAGGGTTACAGACCCCAAGAGGGTCGGGTACGAATGGGTACATTCAGGGCAACAAGTTCTTTGTGAAGCCGAAGATTTCAAAGGTTGCTGAGAACACAAAGGGGTTTGAGGCAGATCAGGGCACTGCTGGTGTTACCAGGAAGCCCAACAAAGATATCCTTGAGCATGATCGCAAGCGTCAGATTCAGCTCAAGCTCACCATCCTTGAAGACAAACTTATTGATCAGGGCTACACTGATGCGGAAATCGCTGAAAAACTCATGGAGGCTCGCCTAAATTTGGAAGCCACTGCTGCCACTGAGGAAATAGATGGACCTGCATCTGTATCTGCATCAGATAAGAAGGTTTCAAATACACAGACTCATCAAATTGCTGCTAGGAAGGAAAAGCAGATGGAAGCATTGAAGGCTGCTCTTGGCATAGTCTCGTCTGAAGCCAATGAAAGAAATGCAGATGGGACTGATGAGCTTGGAAATGATGGGGGAAATGGTTCTAATGTGGAGGGTAATTCAAAGCCTGAACATGCCTTTTTGGACAGAGATTTCAGTAAGAAACAAATGGTTGAAGATCAAAAGGATGAAAATACTAAGAAGAAGAGTGTTAAAGATACAAGGCACCACAAGAAGGTTGAAACTCTTAAGAAAAAGTATGAGGATGATTCATCTGATTCAGACAGCAGTTTGTCTGATGAGAAGAGAGGTACAAGGAAGCGTGGTAAAGAGTACACAAGCAGTAGTGATGAATCTGATTCTGATAGTGATGCTAAGAGGAAGGTCAAGGCTGAAAAGAAGCGGAAGATACCTAAGCACCACAAGAAAGGTAGGGTGGAGGATAGTGATGATACCAATTCTTATGATTCTGATGACAGCGATATTGCAAAAAAAAGTTATAAGAAGACAGATAAGTCTCATAGGAGGCATTTTTCGGATGATGATTCTGATGATCATGAAGATGTCTCCAAGCATAAGACTTGGGAAGGGAAGCAACATTCAAAAATGAGAAAACCTCATGATTCTGCGGTGGAATCTGATGTTGATAGGGAGGAAAAAAAATATGGTAGACGTGAGAAGCAGAAGACAAAGAGGCATAGTTCTGATGATGAGGACTCTTATAGAGATGGTGTTAAGCATGCATCAGGTCAAGACAGATATGTTAGAAGGGGGTCATACACTTCCTCTAATGACAGTAGCAGTGACAGTGATTCAGACAGCGATTCTAGTGATCACAGATATGAAAAAACAAAAAAAGGTGGGCCTGTTGTAGCAAAGAAAGGTAAAGGATATGGCAGGGAAGAAAATAAATTCAGAGATGAAGCCAGAGATAGTGGTGCAGAGAAAGGGAAGAATACTGCTAATATTGATGCATTGGACTCTCTTAAAAAGTCATATGGGACAGATTTTGCAAAGGGATCAAATAGTAGAAGTCGAGAAATGACACAAGGTAGCAGCAGGAAAATTGATGGAGACAGAGATAGGGGGGCCGTCACATTGGTCAAGCATAATGAAGATGATAGAAAAACTGAGTCTGAATCTAAATTAGCTAGGCTTGCAGGGCATGATGATGATAGTTCTGAGCAAAGAGGAAGAAATTATAACAAGGATGTTGAATCACATTTTGTTGGTCGAACTGCTCGCTATGGTGAAGATCATGAAACAAGAAGGCATATAAGAGATGATGATAATCATAGGGAGCATGAGCATAGAAGGGATAATGATAACCGTGGAGAAAGAAAGCATGGAAGGGATGAAGATGATCACACAGGAAGAAAGCTTGCAAGGGAAGAGGATGTTGGAGAAAAAAAGCATGTGAAGGATGAGGACGATTCTAAAGAAAAGCACAGAAGGCATGAGGATGGCCATGGAGATTATCGTATAGGAAGAAAGCACTCAAGGGATGAGGATGATCTTGGAGAAAGAAAGCATGCAAGGGATGAGGATGATTCCAAAGGGAAGCACAGAAGGTATGAGGATGACCGTGGAGAGAGAAAGAACTTGAGGGATGAAGATGACGGTGCAGAGAGAAAGCGTGGAAGGGATGAAGATTACCGAACAGGAAGAAAGCAGACAAGGGATGAGAATGAACATAGAGAAAGAAAGTTCAGAAGGGATGAGGATGATCGGGAAGGAAGAAAGTTCAGAAGGGATGAGGATGTTTATGGAGAAAGAAAGAACTTAAGGGATGAGGATGTGCATGGAGAACGAAAGAACTTGAGGGGGGAGGATGATGATAGGGAAAGAAAGCATTCAAAGGATAAAGATGGTCGTGGAGAAAGAAAGCACAGAAGGGATGATGATGATGATGTTAGTCATGAAAGAAAGCAGTGCAGAAGGGATGAAGATGATCGTGAAGAAAGAAAGCAGCACAGAAGGGATGATGATGGTCGTGGAGAGAGAAAGCACAGAAGGGAGGAGGAAGAGCGGGGAAAGAAAGGTTATGAGAGGGAAAGCCGCTCCAAGAGAGCCAGATACTAA >Glyma14g16981.2 sequence type=CDS gene model=Glyma14g16981 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACAACGGAATAGGGTTACAGACCCCAAGAGGGTCGGGTACGAATGGGTACATTCAGGGCAACAAGTTCTTTGTGAAGCCGAAGATTTCAAAGGTTGCTGAGAACACAAAGGGGTTTGAGGCAGATCAGGGCACTGCTGGTGTTACCAGGAAGCCCAACAAAGATATCCTTGAGCATGATCGCAAGCGTCAGATTCAGCTCAAGCTCACCATCCTTGAAGACAAACTTATTGATCAGGGCTACACTGATGCGGAAATCGCTGAAAAACTCATGGAGGCTCGCCTAAATTTGGAAGCCACTGCTGCCACTGAGGAAATAGATGGACCTGCATCTGTATCTGCATCAGATAAGAAGGTTTCAAATACACAGACTCATCAAATTGCTGCTAGGAAGGAAAAGCAGATGGAAGCATTGAAGGCTGCTCTTGGCATAGTCTCGTCTGAAGCCAATGAAAGAAATGCAGATGGGACTGATGAGCTTGGAAATGATGGGGGAAATGGTTCTAATGTGGAGGGTAATTCAAAGCCTGAACATGCCTTTTTGGACAGAGATTTCAGTAAGAAACAAATGGTTGAAGATCAAAAGGATGAAAATACTAAGAAGAAGAGTGTTAAAGATACAAGGCACCACAAGAAGGTTGAAACTCTTAAGAAAAAGTATGAGGATGATTCATCTGATTCAGACAGCAGTTTGTCTGATGAGAAGAGAGGTACAAGGAAGCGTGGTAAAGAGTACACAAGCAGTAGTGATGAATCTGATTCTGATAGTGATGCTAAGAGGAAGGTCAAGGCTGAAAAGAAGCGGAAGATACCTAAGCACCACAAGAAAGGTAGGGTGGAGGATAGTGATGATACCAATTCTTATGATTCTGATGACAGCGATATTGCAAAAAAAAGTTATAAGAAGACAGATAAGTCTCATAGGAGGCATTTTTCGGATGATGATTCTGATGATCATGAAGATGTCTCCAAGCATAAGACTTGGGAAGGGAAGCAACATTCAAAAATGAGAAAACCTCATGATTCTGCGGTGGAATCTGATGTTGATAGGGAGGAAAAAAAATATGGTAGACGTGAGAAGCAGAAGACAAAGAGGCATAGTTCTGATGATGAGGACTCTTATAGAGATGGTGTTAAGCATGCATCAGGTCAAGACAGATATGTTAGAAGGGGGTCATACACTTCCTCTAATGACAGTAGCAGTGACAGTGATTCAGACAGCGATTCTAGTGATCACAGATATGAAAAAACAAAAAAAGGTGGGCCTGTTGTAGCAAAGAAAGGTAAAGGATATGGCAGGGAAGAAAATAAATTCAGAGATGAAGCCAGAGATAGTGGTGCAGAGAAAGGGAAGAATACTGCTAATATTGATGCATTGGACTCTCTTAAAAAGTCATATGGGACAGATTTTGCAAAGGGATCAAATAGTAGAAGTCGAGAAATGACACAAGGTAGCAGCAGGAAAATTGATGGAGACAGAGATAGGGGGGCCGTCACATTGGTCAAGCATAATGAAGATGATAGAAAAACTGAGTCTGAATCTAAATTAGCTAGGCTTGCAGGGCATGATGATGATAGTTCTGAGCAAAGAGGAAGAAATTATAACAAGGATGTTGAATCACATTTTGTTGGTCGAACTGCTCGCTATGGTGAAGATCATGAAACAAGAAGGCATATAAGAGATGATGATAATCATAGGGAGCATGAGCATAGAAGGGATAATGATAACCGTGGAGAAAGAAAGCATGGAAGGGATGAAGATGATCACACAGGAAGAAAGCTTGCAAGGGAAGAGGATGTTGGAGAAAAAAAGCATGTGAAGGATGAGGACGATTCTAAAGAAAAGCACAGAAGGCATGAGGATGGCCATGGAGATTATCGTATAGGAAGAAAGCACTCAAGGGATGAGGATGATCTTGGAGAAAGAAAGCATGCAAGGGATGAGGATGATTCCAAAGGGAAGCACAGAAGGTATGAGGATGACCGTGGAGAGAGAAAGAACTTGAGGGATGAAGATGACGGTGCAGAGAGAAAGCGTGGAAGGGATGAAGATTACCGAACAGGAAGAAAGCAGACAAGGGATGAGAATGAACATAGAGAAAGAAAGTTCAGAAGGGATGAGGATGATCGGGAAGGAAGAAAGTTCAGAAGGGATGAGGATGTTTATGGAGAAAGAAAGAACTTAAGGGATGAGGATGTGCATGGAGAACGAAAGAACTTGAGGGGGGAGGATGATGATAGGGAAAGAAAGCATTCAAAGGATAAAGATGGTCGTGGAGAAAGAAAGCACAGAAGGGATGATGATGATGATGTTAGTCATGAAAGAAAGCAGTGCAGAAGGGATGAAGATGATCGTGAAGAAAGAAAGCAGCACAGAAGGGATGATGATGGTCGTGGAGAGAGAAAGCACAGAAGGGAGGAGGAAGAGCGGGGAAAGAAAGGTTATGAGAGGGAAAGCCGCTCCAAGAGAGCCAGATACTAA
>Glyma14g16981.1 sequence type=predicted peptide gene model=Glyma14g16981 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYNGIGLQTPRGSGTNGYIQGNKFFVKPKISKVAENTKGFEADQGTAGVTRKPNKDILEHDRKRQIQLKLTILEDKLIDQGYTDAEIAEKLMEARLNLEATAATEEIDGPASVSASDKKVSNTQTHQIAARKEKQMEALKAALGIVSSEANERNADGTDELGNDGGNGSNVEGNSKPEHAFLDRDFSKKQMVEDQKDENTKKKSVKDTRHHKKVETLKKKYEDDSSDSDSSLSDEKRGTRKRGKEYTSSSDESDSDSDAKRKVKAEKKRKIPKHHKKGRVEDSDDTNSYDSDDSDIAKKSYKKTDKSHRRHFSDDDSDDHEDVSKHKTWEGKQHSKMRKPHDSAVESDVDREEKKYGRREKQKTKRHSSDDEDSYRDGVKHASGQDRYVRRGSYTSSNDSSSDSDSDSDSSDHRYEKTKKGGPVVAKKGKGYGREENKFRDEARDSGAEKGKNTANIDALDSLKKSYGTDFAKGSNSRSREMTQGSSRKIDGDRDRGAVTLVKHNEDDRKTESESKLARLAGHDDDSSEQRGRNYNKDVESHFVGRTARYGEDHETRRHIRDDDNHREHEHRRDNDNRGERKHGRDEDDHTGRKLAREEDVGEKKHVKDEDDSKEKHRRHEDGHGDYRIGRKHSRDEDDLGERKHARDEDDSKGKHRRYEDDRGERKNLRDEDDGAERKRGRDEDYRTGRKQTRDENEHRERKFRRDEDDREGRKFRRDEDVYGERKNLRDEDVHGERKNLRGEDDDRERKHSKDKDGRGERKHRRDDDDDVSHERKQCRRDEDDREERKQHRRDDDGRGERKHRREEEERGKKGYERESRSKRARY* >Glyma14g16981.2 sequence type=predicted peptide gene model=Glyma14g16981 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYNGIGLQTPRGSGTNGYIQGNKFFVKPKISKVAENTKGFEADQGTAGVTRKPNKDILEHDRKRQIQLKLTILEDKLIDQGYTDAEIAEKLMEARLNLEATAATEEIDGPASVSASDKKVSNTQTHQIAARKEKQMEALKAALGIVSSEANERNADGTDELGNDGGNGSNVEGNSKPEHAFLDRDFSKKQMVEDQKDENTKKKSVKDTRHHKKVETLKKKYEDDSSDSDSSLSDEKRGTRKRGKEYTSSSDESDSDSDAKRKVKAEKKRKIPKHHKKGRVEDSDDTNSYDSDDSDIAKKSYKKTDKSHRRHFSDDDSDDHEDVSKHKTWEGKQHSKMRKPHDSAVESDVDREEKKYGRREKQKTKRHSSDDEDSYRDGVKHASGQDRYVRRGSYTSSNDSSSDSDSDSDSSDHRYEKTKKGGPVVAKKGKGYGREENKFRDEARDSGAEKGKNTANIDALDSLKKSYGTDFAKGSNSRSREMTQGSSRKIDGDRDRGAVTLVKHNEDDRKTESESKLARLAGHDDDSSEQRGRNYNKDVESHFVGRTARYGEDHETRRHIRDDDNHREHEHRRDNDNRGERKHGRDEDDHTGRKLAREEDVGEKKHVKDEDDSKEKHRRHEDGHGDYRIGRKHSRDEDDLGERKHARDEDDSKGKHRRYEDDRGERKNLRDEDDGAERKRGRDEDYRTGRKQTRDENEHRERKFRRDEDDREGRKFRRDEDVYGERKNLRDEDVHGERKNLRGEDDDRERKHSKDKDGRGERKHRRDDDDDVSHERKQCRRDEDDREERKQHRRDDDGRGERKHRREEEERGKKGYERESRSKRARY*
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