SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G31160 | AT | Annotation by Michelle Graham. TAIR10: DDB1-CUL4 associated factor 1 | chr4:15145936-15152939 FORWARD LENGTH=1883 | SoyBase | E_val: 5.00E-158 | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009880 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification | SoyBase | N/A | ISS |
| GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification | SoyBase | N/A | ISS |
| GO:0010154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fruit development | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010431 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed maturation | SoyBase | N/A | ISS |
| GO:0010564 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0045595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0048367 | GO-bp | Annotation by Michelle Graham. GO Biological Process: shoot development | SoyBase | N/A | ISS |
| GO:0048825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cotyledon development | SoyBase | N/A | ISS |
| GO:0048827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phyllome development | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR13129 | Panther | VPRBP PROTEIN-RELATED | JGI | ISS | |
| PTHR13129:SF4 | Panther | gb def: ebip9171 [anopheles gambiae str. pest] | JGI | ISS | |
| UniRef100_G7JCB0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: DDB1-and CUL4-associated factor-like protein n=1 Tax=Medicago truncatula RepID=G7JCB0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_G7JCB0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DDB1-and CUL4-associated factor-like protein n=1 Tax=Medicago truncatula RepID=G7JCB0_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma14g16791 not represented in the dataset |
Glyma14g16791 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g131100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g16791.1 sequence type=CDS gene model=Glyma14g16791 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACGAACGTAGATTGGGATGGTTCATCCCTTAGGGCGCTGAGCAAGTGCATACGCTCCCTCCAAATTGAACTCGAAGACCCAATTTTCCAAGCCAACCCCACCGTCTCAAACCTAATCGACCAACTCCACGACCTTCTTCAACCTCTCTCTTCCGCCCTAATTCACCAACATCCTTTTCGTGATCCTGCTTCTTCTCTGCCTCGCCATCACGAAAAGAAGATTGATGGAGCTATTCCTACCTTAAGGCAGATTGAAATAGAAGCTATAGCTGCTGCCACCCCTATAACGTACCTTCCAAGGGACCTTTTGCTCCTAATTCATGAACACCTACTGGCATCTGGATTGTTACAAACTGCTTCAATGTTGCTTAAAGAGGCTCAGTTGAAACCTTTGCCAACATTGGTTGCCCCATCTTCTCTTGTGCAACAACCCTACTCACAGGAAGCTCCTCCAATACAACTTCAGTGGCCTTCTGCTCCAGTTCCAGGATTTCTGTCTAAGAAATTAAATCTTAATGCAGAGGATAAGGATGTTGAATCTCAGTATGAGACTCCAATAATCTTGCCAATGAAACATAAGTTATCTGATTTAAAGGATATAGGAGTGTCGTCATCATCTGGAAAGCGATTGAATGTTGGGGATCTAGGATTTCATTCTCCTATTTGTCCAACTCCAAGTGTGATACGTAAAAGTAGCCTGCAGACTGATGCCACTGTGCTTTATACACCAAGTTCCAATCTGAGAAATCAACAAGGGCCCTGTACAGCTGATTATGTGGATGAGAGTCAAAGAAGTATGCCAAATCTAGGTCAGATTACACCATCCTCTCTGGTAATTAATGATCATCTGCCCAATTACCCAGAACGTATAACATTAGATTCTCTAGTGGTTCAGTATCTGCAGCATCAGCATTGCCAGTGCCCAACTCCTATTATCACTCTTCCATCACTTTCTCTTTTGCACCCTCATGTTTGTGCTGAACCCAAGCAAAGTCTTGATGCCCCTTCTAATGTGACATCTCGTCTTGGTACACGTGAATTTAAATTTATGTATCATGTACATGGAAATCGCAGGGATCGTAAATTTGTTTATAGCCAATTCAGACCATCGGGCACTGCTGCTGATGTTTACTCGTTAACAGGCATTACGTTTCTTGGGGACTCTCCTTTTATTGCTGTTGGAAACAACAGTGGAGACATCCAATTTTGGGATACTACTTCATTGAAGCACCATGACGACACCTATCATTATGAAGAATGTCACAGAGATCCCTTGACACTTATTCAGTCTTTTATTTCTGCTGACTGCCAGCTGTTGCTTTCTTCAAGTTCCGAAGATGTAAAGTTGTGGAATGTTTCATCATTTTTAAATGACAATGTTTGGGACGAATACGAAAATGTAATCCATTTTTTTCATGGATGCAAGGCTGCCAGGTTTAGCCACTCAGGGAATGTTTTTGCAGCCTTGTCATCGGAATCTGCACCACAGGAAATCAAGTTATATGATATCGAAACATGTGAGCTAGAGTCTATGTTGTTATATACTTCTACAAATTTTGCCAGTAGGGGTCATCTTTATTCTCCAATCCATTTTAGCCATTCTGACTCAATGCTGCTTTGGAATGGTGTCTTGTGGGACCGTAGGGTTTCTGGGCCTGTTCATCATTTTGATCAGTTGACAGACTTTGGGGGTGGAGGCTTTCATCCTGCTGGCAATGAGGTTATTATAAACTCTGAAGTGTGGGATCTGCGCAAGTTCAGACTTCTTCGTAGTGTACCTTCATTAGATCAAACAACAATAACATTTAATGCTCATGGAGATGTAATATATGCTATTCTAAGGAGAAATATTGAGGATGTAATGTCAGCATTTCACACACGCCGGGTCAAGCATCCGCTTTTTGCAGCTTTCCGCACTGTGGATGCAGTGAATTATTCTGATATTGCTACTACCCCAGTGGAACATTGTGTGCTTGATTTTACTACTGAGCCAACAGATTCATTTGTAGGGTTGGTTACTATAGCAAAACATGATTGGTATATTGAATATGAAGATTCAGATTCAGATGAAAGTCTTCTTCCAGAGACGTGGGGCTGTGTCAAAATCTATGAAATTGGTCATCGAAGTCCAACCAATGACGATTGA
>Glyma14g16791.1 sequence type=predicted peptide gene model=Glyma14g16791 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATNVDWDGSSLRALSKCIRSLQIELEDPIFQANPTVSNLIDQLHDLLQPLSSALIHQHPFRDPASSLPRHHEKKIDGAIPTLRQIEIEAIAAATPITYLPRDLLLLIHEHLLASGLLQTASMLLKEAQLKPLPTLVAPSSLVQQPYSQEAPPIQLQWPSAPVPGFLSKKLNLNAEDKDVESQYETPIILPMKHKLSDLKDIGVSSSSGKRLNVGDLGFHSPICPTPSVIRKSSLQTDATVLYTPSSNLRNQQGPCTADYVDESQRSMPNLGQITPSSLVINDHLPNYPERITLDSLVVQYLQHQHCQCPTPIITLPSLSLLHPHVCAEPKQSLDAPSNVTSRLGTREFKFMYHVHGNRRDRKFVYSQFRPSGTAADVYSLTGITFLGDSPFIAVGNNSGDIQFWDTTSLKHHDDTYHYEECHRDPLTLIQSFISADCQLLLSSSSEDVKLWNVSSFLNDNVWDEYENVIHFFHGCKAARFSHSGNVFAALSSESAPQEIKLYDIETCELESMLLYTSTNFASRGHLYSPIHFSHSDSMLLWNGVLWDRRVSGPVHHFDQLTDFGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTTITFNAHGDVIYAILRRNIEDVMSAFHTRRVKHPLFAAFRTVDAVNYSDIATTPVEHCVLDFTTEPTDSFVGLVTIAKHDWYIEYEDSDSDESLLPETWGCVKIYEIGHRSPTNDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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