Glyma14g16730 - SoyBase

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Report for Sequence Feature Glyma14g16730

Feature Type:	gene_model
Chromosome:	Gm14
Start:	18214240
stop:	18216978
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g16730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11460	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF581) \| chr5:3657064-3658388 REVERSE LENGTH=344	SoyBase	E_val: 1.00E-32	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04570	PFAM	Protein of unknown function (DUF581)	JGI		ISS
UniRef100_G7IDN1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Senescence-associated protein SAG102 n=1 Tax=Medicago truncatula RepID=G7IDN1_MEDTR	SoyBase	E_val: 2.00E-21	ISS
UniRef100_UPI000233BFA4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BFA4 related cluster n=1 Tax=unknown RepID=UPI000233BFA4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g16730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g16730

Paralog	Evidence	Comments
Glyma17g29790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g16730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g130800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g16730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g16730

Limit To All Plant Sequences

>Glyma14g16730.2   sequence type=CDS   gene model=Glyma14g16730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAGAAAGAGGACCAGGTCAATCCAGAAGGATCAACATCACACTGGTCAAATGGCAATCTCTGATACCAATTCTGAGTCTCATGCTTTGGGGGGTAATGGAAAAAGCAACTCAATTTTCAATGCCCCTCTTCTGTTTGTGGGTATGGGTCATAAGGGTTTGTTGGATTGTGATTCAGTTAAGAGCCCCACTTCACCACTAGATTTTGGTTTCCTCTCAAACCTAAGTAACCCCTTTAGAACCCCAAGTTCATTGTCCAATGAGGGGCCACATAGGAGTTGGGACTGTGCCAAAGTAGGTCTAAGTATTATAGATTCTTTGGAAGAATGTTCTAAGTTTTCTTGGAAAATTCTCCAGGCTTCAGAGAGCAAGAAGACTAGTCTTTGTCCCCAAATGATTACTAAAGCACCAAAATGTAAATCCTATATGGATTCTACTCAGGCATCTAAATCTTTACCTAAAGATTTTTGTAAGATTCCTTGTACTCAGAATGGTTCTATTGTCCCTAAGGGCGAGTCCACTGTTCTTTTTGAGATTGGAGAGACCCCTCTAGAACATGAGTTCTTTGGGAAAGCTGTGTCTTTTTCATTGGATTCTTACAGTCCAACAAAATATCTGTCTGGTTTAACTGGTTCCAACTTTGATACTGACTCTGAGAATTTTGCTTTGAAACAAATGTGCTCTCCTCCTCATTTTATTGGAGGAAGCCAAAATAACACAAAAATTTTGCTACCTTCTGAGTTAAATTCAAATCCTGTGGCTGCAGTCTATTCTAATGAATTTATTGAGTCTCTATCAGCTTGTGAGATTGAAAACTCTGAGGATTACACCTGTGTGATTTCTCATGGTCCTAATGCAAAAACAACCCATATTTTCTGTGGCTGCATTTTGGAAACTCATGCTAATGATTCTGAAAGACATTATAAGGCTGAAGAGGAGGGAAAGGGATTGTCCCTTTTCAGTGTTAACATTTTGCATACTCCAAACCAGTATCCTTCTCACGACTTCTTAAGTGTCTGCTACCATTGCAACAAGAAGTTGGAAGAGGGAAAAGATATTTATATATATAGAGGTGAAAAATCATTTTGCAGTTTGAGTTGCCGCGAAATAGAGATCATGATGGATGAGCAAGAGAAATCCAATTCATCACCAGAAAACTCTCCAAAGTGTGGATTTGGAGGGGAAGTTTTTGAAACAGGCACTCCCATAGCTACATAG

Predicted protein sequences of Glyma14g16730

Limit To All Plant Sequences

>Glyma14g16730.2   sequence type=predicted peptide   gene model=Glyma14g16730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRKRTRSIQKDQHHTGQMAISDTNSESHALGGNGKSNSIFNAPLLFVGMGHKGLLDCDSVKSPTSPLDFGFLSNLSNPFRTPSSLSNEGPHRSWDCAKVGLSIIDSLEECSKFSWKILQASESKKTSLCPQMITKAPKCKSYMDSTQASKSLPKDFCKIPCTQNGSIVPKGESTVLFEIGETPLEHEFFGKAVSFSLDSYSPTKYLSGLTGSNFDTDSENFALKQMCSPPHFIGGSQNNTKILLPSELNSNPVAAVYSNEFIESLSACEIENSEDYTCVISHGPNAKTTHIFCGCILETHANDSERHYKAEEEGKGLSLFSVNILHTPNQYPSHDFLSVCYHCNKKLEEGKDIYIYRGEKSFCSLSCREIEIMMDEQEKSNSSPENSPKCGFGGEVFETGTPIAT*

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