Glyma14g16390 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma14g16390

Feature Type:	gene_model
Chromosome:	Gm14
Start:	17789306
stop:	17796790
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g16390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32620	AT	Annotation by Michelle Graham. TAIR10: Enhancer of polycomb-like transcription factor protein \| chr4:15731968-15737222 FORWARD LENGTH=1539	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF10513	PFAM	Enhancer of polycomb-like	JGI		ISS
UniRef100_F4JV28	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Enhancer of polycomb-like transcription factor protein n=2 Tax=Arabidopsis thaliana RepID=F4JV28_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BF9D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BF9D related cluster n=1 Tax=unknown RepID=UPI000233BF9D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g16390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g16390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g129600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g16390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g16390

Limit To All Plant Sequences

>Glyma14g16390.2   sequence type=CDS   gene model=Glyma14g16390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTATCTTCAAGGTTTGATCCAAGCTGTACTGGGTTTTCTATGAAAGGTTCAAATGGTTTGTCTGTTTTCCGATCTTCTAGTCAAAGTATTGTTAACCGTGGTTTGAATTCTCAGTTAGGTTCAGAATCAGCATCAGCTGATACTGCTGTCAGAGTTTTGAGGCCTAGGAAACAATATAGAAACAAGGGTAATTCAAGGAAGAGGCGCCATTTTTATGAAATCCTTTTAGGTGATGTGGATGCATATTGGGTACTGAATCGGAGAATTAAAATCTTTTGGCCATTGGACCAGAGTTGGTATTATGGCCTCGTGGATAACTATGATGAAGGAAGCAAGCTTTATCATATCAAATATGATGATCGAGATGTAGAATGGGTTAATCTTGAAACTGAGAGATTCAAACTCTTGTTACTTCGTAGTGAAGTTCCTGGAAATGCAAAGGGTGAGAGAGCCTTAACGAAACGTAGCAGTTTTGATCACCAAAAGGGAAGCAAATCCAGAAAAGAAAGGCAAAGAACAGAAGCGAATGCAGGGGATGATCGTTGTGGTGATAGCAGTTTGGACTCAGAACCTATAATTTCGTGGTTGGCTCAATCTTCTAATCGGCTTAGATCTTTTCAGGGCATTAAGAAACAGAAAACTTCTGTTACAGTTCCAAGTACAATGTCATCATTCTTATATGATGAACCTGTTACAGCAAAGGGGCATTTAGCTAAGAGTTCTTTGAGGGGTGTTGAAAATAATTTCTCTAGTTGTTGTGTATCACAAGATAAATCAAGTGATGATTTTAAGGATAAGTCCTCATTGCAATGTGTCACTCGTGCTAAAGATGGAAAACAGCCTATGGTCTATTTCAGAAGGCGGCGGATTTTTAAGCCAGCTCCAATATCCCCTCATATCTCTGAAAGAAACCATGCTAGTATAAGTGCATCCGGTTCTGTTGCCTTTGACCATATGTTTGGTGGGGTTGAGAATGTGAAAAATCCAATTGACAACAGGGTTGAGGTTGGGGGCCCATTGTTCTTCACTTACAAGGCTGGAGTATCAAATTTTTTTTGGGACATGGAGTCAGCATCATTCAAATTTGGCTTTAACTTTCCAATGCGTTTGGTGTTGAGTGACTTTTTTCAATCAGAAAATGTGTGGTTGCTTTACACTGTTTTGCTGCTTCGGTTCGGTACAGTTATGGCCAAGTGGCCTAGAGTTTGTTTGGAGATGCTTTTTGTTGATAATGTGGTTGGGTTGAGGTTTCTATCATTTGAAGGCTGCTTGAACATGGCTGCAGCTTTTGTCCTTTTTGTCCTTAGGGTGTTTCATCAACCTGCTTGCCAAGGGAAGTATGTTGACTTGCAATTTCCATGTACATCTATTGGATTCAAGTTTTCTAGTGTTCATGTTATTAAGATGCCACTTGTGTTTGAGTTCTATAATTTCTCTGAAGTGAAGAATTCAAAGTGGATGTACTTGGATTCTAAGCTAAAAGGGCATTGCCTGCTCAGTAAGCAGCTCCAGCTTTCTGAATGCACATATGATAACATCCAGGCACTTCAAAATGGATCAAGAAGGTTCTCCATAACTTCTATCAGTGGGCCTTCCTCAGTCAAGGTCACACAGAAGAGTAGGCCAGGGATTAACATCATTGGTGTTTCCAAAGGGTCCACTCAAGCTGATACTCTTCCATATTCTGATGCTGGCGAGAGGAAACTTCCTCCATTTGGTCTCTCTTTTGCTGCTGCACCTACATTTTTTCTTTGTTTGCATCTCAAGTTGCTGATGGAGCAGTCTGCAACATGTATAAGATTTTGTGATCAAACACCAATATTTGATCAGGAAGACCCTGGTTTGATGACAAATGGATGTACTAGCACTGATGATTGCTCAAACAGGAATTCTGAAGTTATTCTTAGGAGAGGTATGGAGACTTTGTCAAACAGTGCTGCAGATGATGGAGGGTCTTGTGCTGACTCAGATAATCCCTCTACTTGTAATGACCAAATTCTCACTCGAAATTACCAGAACATTGGTCTTAACGGTGCTATTACTTCCATTTCTCATGATTTTGAGAGGCTTTGTAAAACTCACTTACCCGAATGGCAATCCCACTATTTGGAGCAAGAGTTAGTCTCTTTACCTTCAAGTTCTTTAAAACATCAAGATAAGGCTAATGATGGTTCTCATTCTTTTATTGGTGATCTCAGTATTCAAATTCCTGCTGTTGATCAATTTGAGAAACCTGATGATAACGGTGATTTATGTGATGCTGAACACTCTCCTGATTTCTCTTGGAATATAAATGGATGTGGTATTCCAAGCTCCAATCCAACTGCTCACAGAAGTTCTTGGTATCAGAACCGGAATAATTCCTTGTCATTGGGATTTCAGTCTCATGTGTGGTCTGATAAAAAGGTTGATTCTCTTTGCAATGATTTGAGCAATGGACCTAAAAAACCACGTACACAAGTATCATACTCAGTGCCTTCAGCAGGGTATGAATTCAGTTCAAGGCAAAGAAACCATCATCAGAAAGGGCTTTCTCACAAACGAGTTAGAAAGGCTAGCGAGAAGTCATCAGATGTTGCTAGGGTCCCTGAAAAGAATATCAAATGCTTATCTTGTGGTGCAAATGTCTTGATTACTCATGGTGATAAGGGTTGGAGAGAATCCAGGGCCCATGTTGTACTAGAGGTGTTTGACCACAATGAGTGGAGACTTTCTGTGAAACTTTTTGGAATTACTAGGTATTCATACAAAGCACACCAGTTTCTGCAGCCTGGATCAACAAATCGGTACACACATGCAATGATGTGGAAAGGAGGGAAGGATTGGATCTTGGAATTTCCGGATAGGAGTCAGTGGGCTCTTTTCAAGGAGATGCATGAGGAATGCTACAACCGTAACATCCGTTCTGCTTCAGTTAGAAACATACCTATTCCTGGTGTTCATTTGATAGAAGAAAATGATGATAATGGATCTGAGGAAACTTTTATTCGGAGCTGTATGTACTTTCAACAAGTTGAAGCAGATGCTGAGATGGCTTTGGATCCATGCCGTGTTCTGTATGACATGGATAGTGAGGATGAGCAGTGGATTTCAAATGCTCAAAATTCTGTAAAAGACAACAGTGAATTTTCTTGGATCTCTGAGGAGATGTTTGAGAAGACAATAGACGTGTTTGAAAAGGCTGCATATGCTAAGAAGCTTGATCATTTTACTCCTGATGAGATAGAGGACCTCATGCTTAATGTTGGGCCTTTGTGTGTTGTCAAAATCATTTATGACCATTGGCAGCAGAGGAGGCAGAAGAAGGGAATGGCTTTAATTCGGCACTTTCAGCCCCCTCTGTGGGAAAGATATCAGAAACAAGTGAGAGAGTGGGAACTAGCCATGACCAAGAACAATGCCCCTTCTAATGGATGCCTGGACAAGGTTACAACTTTGGAGAAGCCGGCCATGTTTGCTTTCTGTTTGAAACCTAGGGGTCTGGAATCACTGAACAAGGGATTGAAACATCGATCCCAAAAGAAGATTTCAGTCTCTGGGAATGCAAACAGTAATCTAGATCAGGATGGCTTCCACACTTTCAGAAGAAGACAGAATGCTTTACCTTTTGGCGATGAAAACCAAGGCCACAGTTACGATTCTTTTGATGATTCATCATTGGCTCTGACCTCAGCAAGGGTATTCTTACCTCGTGATGCTGGCAGCTTGAAATACTATCCTACTAGTAATGGAGCAGGATATAGAAATCATATCCCAAAATTTCACAAGCCCAGATATGATTCGCCTGGTAGCAGGCATCACTTTCTTGCTGGCCCTAAGAGGCAAGGGATTGAGCAGTTGGATGCTTCCGTCCTTGAGGAGTTAAGACAACGTGATGCCATGGCCGAGGCTCGTTTTAAGTGCCATTTGGCTAAGCTGAAGAGAGATAGGGCTAAAAGATTGCTATATAAAGTAGATGTAGCAATTCACAAGGCCATTGCTACTCTAATGACTGCAGAAGCAATGAAAGCTTCTGAGGACTCCCTTGGTGAAATTAAAGCTTATGAGGACTAA

Predicted protein sequences of Glyma14g16390

Limit To All Plant Sequences

>Glyma14g16390.2   sequence type=predicted peptide   gene model=Glyma14g16390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSSRFDPSCTGFSMKGSNGLSVFRSSSQSIVNRGLNSQLGSESASADTAVRVLRPRKQYRNKGNSRKRRHFYEILLGDVDAYWVLNRRIKIFWPLDQSWYYGLVDNYDEGSKLYHIKYDDRDVEWVNLETERFKLLLLRSEVPGNAKGERALTKRSSFDHQKGSKSRKERQRTEANAGDDRCGDSSLDSEPIISWLAQSSNRLRSFQGIKKQKTSVTVPSTMSSFLYDEPVTAKGHLAKSSLRGVENNFSSCCVSQDKSSDDFKDKSSLQCVTRAKDGKQPMVYFRRRRIFKPAPISPHISERNHASISASGSVAFDHMFGGVENVKNPIDNRVEVGGPLFFTYKAGVSNFFWDMESASFKFGFNFPMRLVLSDFFQSENVWLLYTVLLLRFGTVMAKWPRVCLEMLFVDNVVGLRFLSFEGCLNMAAAFVLFVLRVFHQPACQGKYVDLQFPCTSIGFKFSSVHVIKMPLVFEFYNFSEVKNSKWMYLDSKLKGHCLLSKQLQLSECTYDNIQALQNGSRRFSITSISGPSSVKVTQKSRPGINIIGVSKGSTQADTLPYSDAGERKLPPFGLSFAAAPTFFLCLHLKLLMEQSATCIRFCDQTPIFDQEDPGLMTNGCTSTDDCSNRNSEVILRRGMETLSNSAADDGGSCADSDNPSTCNDQILTRNYQNIGLNGAITSISHDFERLCKTHLPEWQSHYLEQELVSLPSSSLKHQDKANDGSHSFIGDLSIQIPAVDQFEKPDDNGDLCDAEHSPDFSWNINGCGIPSSNPTAHRSSWYQNRNNSLSLGFQSHVWSDKKVDSLCNDLSNGPKKPRTQVSYSVPSAGYEFSSRQRNHHQKGLSHKRVRKASEKSSDVARVPEKNIKCLSCGANVLITHGDKGWRESRAHVVLEVFDHNEWRLSVKLFGITRYSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWALFKEMHEECYNRNIRSASVRNIPIPGVHLIEENDDNGSEETFIRSCMYFQQVEADAEMALDPCRVLYDMDSEDEQWISNAQNSVKDNSEFSWISEEMFEKTIDVFEKAAYAKKLDHFTPDEIEDLMLNVGPLCVVKIIYDHWQQRRQKKGMALIRHFQPPLWERYQKQVREWELAMTKNNAPSNGCLDKVTTLEKPAMFAFCLKPRGLESLNKGLKHRSQKKISVSGNANSNLDQDGFHTFRRRQNALPFGDENQGHSYDSFDDSSLALTSARVFLPRDAGSLKYYPTSNGAGYRNHIPKFHKPRYDSPGSRHHFLAGPKRQGIEQLDASVLEELRQRDAMAEARFKCHLAKLKRDRAKRLLYKVDVAIHKAIATLMTAEAMKASEDSLGEIKAYED*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain