SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G32620 | AT | Annotation by Michelle Graham. TAIR10: Enhancer of polycomb-like transcription factor protein | chr4:15731968-15737222 FORWARD LENGTH=1539 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0010050 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative phase change | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| PF10513 | PFAM | Enhancer of polycomb-like | JGI | ISS | |
| UniRef100_F4JV28 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Enhancer of polycomb-like transcription factor protein n=2 Tax=Arabidopsis thaliana RepID=F4JV28_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BF9D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BF9D related cluster n=1 Tax=unknown RepID=UPI000233BF9D | SoyBase | E_val: 0 | ISS |
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Glyma14g16390 not represented in the dataset |
Glyma14g16390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g129600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g16390.2 sequence type=CDS gene model=Glyma14g16390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTATCTTCAAGGTTTGATCCAAGCTGTACTGGGTTTTCTATGAAAGGTTCAAATGGTTTGTCTGTTTTCCGATCTTCTAGTCAAAGTATTGTTAACCGTGGTTTGAATTCTCAGTTAGGTTCAGAATCAGCATCAGCTGATACTGCTGTCAGAGTTTTGAGGCCTAGGAAACAATATAGAAACAAGGGTAATTCAAGGAAGAGGCGCCATTTTTATGAAATCCTTTTAGGTGATGTGGATGCATATTGGGTACTGAATCGGAGAATTAAAATCTTTTGGCCATTGGACCAGAGTTGGTATTATGGCCTCGTGGATAACTATGATGAAGGAAGCAAGCTTTATCATATCAAATATGATGATCGAGATGTAGAATGGGTTAATCTTGAAACTGAGAGATTCAAACTCTTGTTACTTCGTAGTGAAGTTCCTGGAAATGCAAAGGGTGAGAGAGCCTTAACGAAACGTAGCAGTTTTGATCACCAAAAGGGAAGCAAATCCAGAAAAGAAAGGCAAAGAACAGAAGCGAATGCAGGGGATGATCGTTGTGGTGATAGCAGTTTGGACTCAGAACCTATAATTTCGTGGTTGGCTCAATCTTCTAATCGGCTTAGATCTTTTCAGGGCATTAAGAAACAGAAAACTTCTGTTACAGTTCCAAGTACAATGTCATCATTCTTATATGATGAACCTGTTACAGCAAAGGGGCATTTAGCTAAGAGTTCTTTGAGGGGTGTTGAAAATAATTTCTCTAGTTGTTGTGTATCACAAGATAAATCAAGTGATGATTTTAAGGATAAGTCCTCATTGCAATGTGTCACTCGTGCTAAAGATGGAAAACAGCCTATGGTCTATTTCAGAAGGCGGCGGATTTTTAAGCCAGCTCCAATATCCCCTCATATCTCTGAAAGAAACCATGCTAGTATAAGTGCATCCGGTTCTGTTGCCTTTGACCATATGTTTGGTGGGGTTGAGAATGTGAAAAATCCAATTGACAACAGGGTTGAGGTTGGGGGCCCATTGTTCTTCACTTACAAGGCTGGAGTATCAAATTTTTTTTGGGACATGGAGTCAGCATCATTCAAATTTGGCTTTAACTTTCCAATGCGTTTGGTGTTGAGTGACTTTTTTCAATCAGAAAATGTGTGGTTGCTTTACACTGTTTTGCTGCTTCGGTTCGGTACAGTTATGGCCAAGTGGCCTAGAGTTTGTTTGGAGATGCTTTTTGTTGATAATGTGGTTGGGTTGAGGTTTCTATCATTTGAAGGCTGCTTGAACATGGCTGCAGCTTTTGTCCTTTTTGTCCTTAGGGTGTTTCATCAACCTGCTTGCCAAGGGAAGTATGTTGACTTGCAATTTCCATGTACATCTATTGGATTCAAGTTTTCTAGTGTTCATGTTATTAAGATGCCACTTGTGTTTGAGTTCTATAATTTCTCTGAAGTGAAGAATTCAAAGTGGATGTACTTGGATTCTAAGCTAAAAGGGCATTGCCTGCTCAGTAAGCAGCTCCAGCTTTCTGAATGCACATATGATAACATCCAGGCACTTCAAAATGGATCAAGAAGGTTCTCCATAACTTCTATCAGTGGGCCTTCCTCAGTCAAGGTCACACAGAAGAGTAGGCCAGGGATTAACATCATTGGTGTTTCCAAAGGGTCCACTCAAGCTGATACTCTTCCATATTCTGATGCTGGCGAGAGGAAACTTCCTCCATTTGGTCTCTCTTTTGCTGCTGCACCTACATTTTTTCTTTGTTTGCATCTCAAGTTGCTGATGGAGCAGTCTGCAACATGTATAAGATTTTGTGATCAAACACCAATATTTGATCAGGAAGACCCTGGTTTGATGACAAATGGATGTACTAGCACTGATGATTGCTCAAACAGGAATTCTGAAGTTATTCTTAGGAGAGGTATGGAGACTTTGTCAAACAGTGCTGCAGATGATGGAGGGTCTTGTGCTGACTCAGATAATCCCTCTACTTGTAATGACCAAATTCTCACTCGAAATTACCAGAACATTGGTCTTAACGGTGCTATTACTTCCATTTCTCATGATTTTGAGAGGCTTTGTAAAACTCACTTACCCGAATGGCAATCCCACTATTTGGAGCAAGAGTTAGTCTCTTTACCTTCAAGTTCTTTAAAACATCAAGATAAGGCTAATGATGGTTCTCATTCTTTTATTGGTGATCTCAGTATTCAAATTCCTGCTGTTGATCAATTTGAGAAACCTGATGATAACGGTGATTTATGTGATGCTGAACACTCTCCTGATTTCTCTTGGAATATAAATGGATGTGGTATTCCAAGCTCCAATCCAACTGCTCACAGAAGTTCTTGGTATCAGAACCGGAATAATTCCTTGTCATTGGGATTTCAGTCTCATGTGTGGTCTGATAAAAAGGTTGATTCTCTTTGCAATGATTTGAGCAATGGACCTAAAAAACCACGTACACAAGTATCATACTCAGTGCCTTCAGCAGGGTATGAATTCAGTTCAAGGCAAAGAAACCATCATCAGAAAGGGCTTTCTCACAAACGAGTTAGAAAGGCTAGCGAGAAGTCATCAGATGTTGCTAGGGTCCCTGAAAAGAATATCAAATGCTTATCTTGTGGTGCAAATGTCTTGATTACTCATGGTGATAAGGGTTGGAGAGAATCCAGGGCCCATGTTGTACTAGAGGTGTTTGACCACAATGAGTGGAGACTTTCTGTGAAACTTTTTGGAATTACTAGGTATTCATACAAAGCACACCAGTTTCTGCAGCCTGGATCAACAAATCGGTACACACATGCAATGATGTGGAAAGGAGGGAAGGATTGGATCTTGGAATTTCCGGATAGGAGTCAGTGGGCTCTTTTCAAGGAGATGCATGAGGAATGCTACAACCGTAACATCCGTTCTGCTTCAGTTAGAAACATACCTATTCCTGGTGTTCATTTGATAGAAGAAAATGATGATAATGGATCTGAGGAAACTTTTATTCGGAGCTGTATGTACTTTCAACAAGTTGAAGCAGATGCTGAGATGGCTTTGGATCCATGCCGTGTTCTGTATGACATGGATAGTGAGGATGAGCAGTGGATTTCAAATGCTCAAAATTCTGTAAAAGACAACAGTGAATTTTCTTGGATCTCTGAGGAGATGTTTGAGAAGACAATAGACGTGTTTGAAAAGGCTGCATATGCTAAGAAGCTTGATCATTTTACTCCTGATGAGATAGAGGACCTCATGCTTAATGTTGGGCCTTTGTGTGTTGTCAAAATCATTTATGACCATTGGCAGCAGAGGAGGCAGAAGAAGGGAATGGCTTTAATTCGGCACTTTCAGCCCCCTCTGTGGGAAAGATATCAGAAACAAGTGAGAGAGTGGGAACTAGCCATGACCAAGAACAATGCCCCTTCTAATGGATGCCTGGACAAGGTTACAACTTTGGAGAAGCCGGCCATGTTTGCTTTCTGTTTGAAACCTAGGGGTCTGGAATCACTGAACAAGGGATTGAAACATCGATCCCAAAAGAAGATTTCAGTCTCTGGGAATGCAAACAGTAATCTAGATCAGGATGGCTTCCACACTTTCAGAAGAAGACAGAATGCTTTACCTTTTGGCGATGAAAACCAAGGCCACAGTTACGATTCTTTTGATGATTCATCATTGGCTCTGACCTCAGCAAGGGTATTCTTACCTCGTGATGCTGGCAGCTTGAAATACTATCCTACTAGTAATGGAGCAGGATATAGAAATCATATCCCAAAATTTCACAAGCCCAGATATGATTCGCCTGGTAGCAGGCATCACTTTCTTGCTGGCCCTAAGAGGCAAGGGATTGAGCAGTTGGATGCTTCCGTCCTTGAGGAGTTAAGACAACGTGATGCCATGGCCGAGGCTCGTTTTAAGTGCCATTTGGCTAAGCTGAAGAGAGATAGGGCTAAAAGATTGCTATATAAAGTAGATGTAGCAATTCACAAGGCCATTGCTACTCTAATGACTGCAGAAGCAATGAAAGCTTCTGAGGACTCCCTTGGTGAAATTAAAGCTTATGAGGACTAA
>Glyma14g16390.2 sequence type=predicted peptide gene model=Glyma14g16390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSSRFDPSCTGFSMKGSNGLSVFRSSSQSIVNRGLNSQLGSESASADTAVRVLRPRKQYRNKGNSRKRRHFYEILLGDVDAYWVLNRRIKIFWPLDQSWYYGLVDNYDEGSKLYHIKYDDRDVEWVNLETERFKLLLLRSEVPGNAKGERALTKRSSFDHQKGSKSRKERQRTEANAGDDRCGDSSLDSEPIISWLAQSSNRLRSFQGIKKQKTSVTVPSTMSSFLYDEPVTAKGHLAKSSLRGVENNFSSCCVSQDKSSDDFKDKSSLQCVTRAKDGKQPMVYFRRRRIFKPAPISPHISERNHASISASGSVAFDHMFGGVENVKNPIDNRVEVGGPLFFTYKAGVSNFFWDMESASFKFGFNFPMRLVLSDFFQSENVWLLYTVLLLRFGTVMAKWPRVCLEMLFVDNVVGLRFLSFEGCLNMAAAFVLFVLRVFHQPACQGKYVDLQFPCTSIGFKFSSVHVIKMPLVFEFYNFSEVKNSKWMYLDSKLKGHCLLSKQLQLSECTYDNIQALQNGSRRFSITSISGPSSVKVTQKSRPGINIIGVSKGSTQADTLPYSDAGERKLPPFGLSFAAAPTFFLCLHLKLLMEQSATCIRFCDQTPIFDQEDPGLMTNGCTSTDDCSNRNSEVILRRGMETLSNSAADDGGSCADSDNPSTCNDQILTRNYQNIGLNGAITSISHDFERLCKTHLPEWQSHYLEQELVSLPSSSLKHQDKANDGSHSFIGDLSIQIPAVDQFEKPDDNGDLCDAEHSPDFSWNINGCGIPSSNPTAHRSSWYQNRNNSLSLGFQSHVWSDKKVDSLCNDLSNGPKKPRTQVSYSVPSAGYEFSSRQRNHHQKGLSHKRVRKASEKSSDVARVPEKNIKCLSCGANVLITHGDKGWRESRAHVVLEVFDHNEWRLSVKLFGITRYSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWALFKEMHEECYNRNIRSASVRNIPIPGVHLIEENDDNGSEETFIRSCMYFQQVEADAEMALDPCRVLYDMDSEDEQWISNAQNSVKDNSEFSWISEEMFEKTIDVFEKAAYAKKLDHFTPDEIEDLMLNVGPLCVVKIIYDHWQQRRQKKGMALIRHFQPPLWERYQKQVREWELAMTKNNAPSNGCLDKVTTLEKPAMFAFCLKPRGLESLNKGLKHRSQKKISVSGNANSNLDQDGFHTFRRRQNALPFGDENQGHSYDSFDDSSLALTSARVFLPRDAGSLKYYPTSNGAGYRNHIPKFHKPRYDSPGSRHHFLAGPKRQGIEQLDASVLEELRQRDAMAEARFKCHLAKLKRDRAKRLLYKVDVAIHKAIATLMTAEAMKASEDSLGEIKAYED*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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