SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma14g16220

Feature Type:gene_model
Chromosome:Gm14
Start:17609469
stop:17613085
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g16220
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G25660AT Annotation by Michelle Graham. TAIR10: embryo defective 2410 | chr2:10916456-10927390 REVERSE LENGTH=2166 SoyBaseE_val: 1.00E-156ISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04357PFAM Family of unknown function (DUF490) JGI ISS
UniRef100_D7LBF6UniRef Annotation by Michelle Graham. Most informative UniRef hit: EMB2410 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LBF6_ARALL SoyBaseE_val: 7.00E-155ISS
UniRef100_I1M9N2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M9N2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g16220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g16220 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g129300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g16220
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g16220
>Glyma14g16220.2   sequence type=CDS   gene model=Glyma14g16220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTCGTGCCTGAGTTCCGATTCTGGAGACCGGCGCATGAGAAGCATGCGCCTGGCTGAGTCACGGAGAAACGATTCAGTGCCAGTTAACAAGTCAACTCAGGTTGAAAAGCAGATGGAGCAAATACAGATTAAACCAAATGTTGAAATCCGTCTCAATGATTTGAAGCTTGTGCTTGGACCAGAGTTGAAGATAGTTTATCCTTTGATTCTTAATTTTGGTGTAAGTGGAGAGCTTGAGTTAAATGGTCAGGCCCATCCCAAATGGATAAAACCTAGAGGCATACTGTCATTTGAGAACGGTGAAGTTGATCTAGTTGCAACACAGGTGAGGTTAAAACGAGAACATTTAAATATTGCAAAGTTTGAGCCTGAGTGTGGACTAGATCCAATGCTTGATTTAGCTTTGGTTGGATCTGAGTGGCAATTCAGAATTCAAGGTAGAGCTAGCAATTGGCTGGGCAAACTTGAGATGACCTCAACACGTTCTGTGGAACAGGATGCACTTTCACCTGCTGAGGCTGCCCAAAGATTTGAGAGTCAATTGGCTGAGTCCATTTTGAAAGACAATGGTCAGCTTGCTTTTGAAAAGCTTGCAACTGCTACTCTAGAAAAATTGATGCCACGAATAGAAGGGAAGGGAGAGTTTGGCCAGGCTAGGTGGAGGCTAGTGTATGCACCTCAGATTCCTAGTTTAGTTTCTGTTGATCCTACAGCAGATCCTCTCAAGTCACTTGCCAGTAATATATCTTTTGGTACAGAAGTTGAAGTTCAGCTTGGGAAACGTCTTCAGGCCACAATCGTTAGGCAAATGAAGGAGTCCGAGATGGCAATGCAATGGACATTGAGCTATCTGCTTACAAGTCGTTTGCGAGTGCTCCTACAATCTGCTCCATCCAAACGCCTTCTTTTTGAATATTCTGCCACATCCCAGGATTGA
Predicted protein sequences of Glyma14g16220
>Glyma14g16220.2   sequence type=predicted peptide   gene model=Glyma14g16220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSCLSSDSGDRRMRSMRLAESRRNDSVPVNKSTQVEKQMEQIQIKPNVEIRLNDLKLVLGPELKIVYPLILNFGVSGELELNGQAHPKWIKPRGILSFENGEVDLVATQVRLKREHLNIAKFEPECGLDPMLDLALVGSEWQFRIQGRASNWLGKLEMTSTRSVEQDALSPAEAAQRFESQLAESILKDNGQLAFEKLATATLEKLMPRIEGKGEFGQARWRLVYAPQIPSLVSVDPTADPLKSLASNISFGTEVEVQLGKRLQATIVRQMKESEMAMQWTLSYLLTSRLRVLLQSAPSKRLLFEYSATSQD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo