Glyma14g16200 - SoyBase

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Report for Sequence Feature Glyma14g16200

Feature Type:	gene_model
Chromosome:	Gm14
Start:	17593529
stop:	17596109
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g16200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11440	AT	Annotation by Michelle Graham. TAIR10: CTC-interacting domain 5 \| chr5:3653060-3653607 REVERSE LENGTH=155	SoyBase	E_val: 7.00E-25	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
UniRef100_D7M3Q7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CID5/IPD1 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M3Q7_ARALL	SoyBase	E_val: 2.00E-22	ISS
UniRef100_I1M9N1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9N1_SOYBN	SoyBase	E_val: 1.00E-138	ISS

Expression Patterns of Glyma14g16200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g16200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g129200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g16200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g16200

Limit To All Plant Sequences

>Glyma14g16200.4   sequence type=transcript   gene model=Glyma14g16200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATAACAGTTGCGCAGAGGAGAAAATAATTTAACTTCTCTGTCTCAATCATTTCATTATAGTTTTCTCTCCCTTCCAATCCCAGCGATCTCCAGTTAGGGTTTCGTTTCGTGATTTCTGTCTCACTGGAAAAGGAATATCAAGAAGAAGAATTGTTTATCTACATCTGATTCAAGTCCATGAAGCCACAATCATCGTCTTTGAATCCATATGCAACGTCATATGTTCCTCTCTCTAAAAGGGGGGTAGATGGTAGAACACCTTCGACTGAAAAAGATTCCAAGACTTATAATGGGACAGTATGGTTTCAGACTCATCAGGGTGCCACAAATGATCCACAACTTATCAACACTAGCTTGGAAAGGCTCTCGAAATCCGAATCTTTTCTGGCAAAAGGCCAGCCTGCTTCTAGTTCCTACACAGGCTACACTTCATCACAGAATGTGGCAGAGTTATCGGATAATCAGTTGCTAGATGAAGAAGTTGATATGGATTTGGAGTATCTTAGGATGAATTTTCCTGGTATATCTTATCAGTCCCTTGTAGATGTCTATAATGTAAACAGTGGTGACTTGGATGCTGCTATTGACATGCTCAGCCAACTTGAGTTGGAGGGAGATGAAACTTCTGGAATTCTTCCAGAGACACTGGATATTGGTGACGTTTCAGAGTCCGGATTGCCAGCTGATTCTGCTTCACTAAAACAGAAGAATGTAGCAGAGGAAACCAACACTTCATCTAGTCACATGGCATCAGCCAATGTCTTGTGAATTGGTTTGTCATTCACAATTGTTTTGGTTGGATATATGTGTAAAAATAAAAAAATTTACCTTAGGTGGAGATGTCTCTATCATCGATTTTATGGTTTGTATAGTTCTATACATTGTCTTGTTTTGGTGGTCTGTTTTCTTTTGATGAGTTGCTTGTACAATTGGGACCCCCTTTCAATTGCATGAATTGGAAGTGTCCAGAATGGGGGAGAAAGGTAAAAGAAAAACAACACATAAATGAAGGTGATTTTCTCTTGGGATTGATAATCTTGTTGACTTGCTCGCTGGATTGTGCCGTGGTGAGCTAGCTTGAATCTTTTACTGCTATAGATATAATACAACATATTTATTTTCTTTTTTATTCTGTTTAGTGGTGTAATGGTT

>Glyma14g16200.5   sequence type=transcript   gene model=Glyma14g16200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATAACAGTTGCGCAGAGGAGAAAATAATTTAACTTCTCTGTCTCAATCATTTCATTATAGTTTTCTCTCCCTTCCAATCCCAGCGATCTCCAGAAAAGGAATATCAAGAAGAAGAATTGTTTATCTACATCTGATTCAAGTCCATGAAGCCACAATCATCGTCTTTGAATCCATATGCAACGTCATATGTTCCTCTCTCTAAAAGGGGGGTAGATGGTAGAACACCTTCGACTGAAAAAGATTCCAAGACTTATAATGGGACAGTATGGTTTCAGACTCATCAGGGTGCCACAAATGATCCACAACTTATCAACACTAGCTTGGAAAGGCTCTCGAAATCCGAATCTTTTCTGGCAAAAGGCCAGCCTGCTTCTAGTTCCTACACAGGCTACACTTCATCACAGAATGTGGCAGAGTTATCGGATAATCAGTTGCTAGATGAAGAAGTTGATATGGATTTGGAGTATCTTAGGATGAATTTTCCTGGTATATCTTATCAGTCCCTTGTAGATGTCTATAATGTAAACAGTGGTGACTTGGATGCTGCTATTGACATGCTCAGCCAACTTGAGTTGGAGGGAGATGAAACTTCTGGAATTCTTCCAGAGACACTGGATATTGGTGACGTTTCAGAGTCCGGATTGCCAGCTGATTCTGCTTCACTAAAACAGAAGAATGTAGCAGAGGAAACCAACACTTCATCTAGTCACATGGCATCAGCCAATGTCTTGTGAATTGGTTTGTCATTCACAATTGTTTTGGTTGGATATATGTGTAAAAATAAAAAAATTTACCTTAGGTGGAGATGTCTCTATCATCGATTTTATGGTTTGTATAGTTCTATACATTGTCTTGTTTTGGTGGTCTGTTTTCTTTTGATGAGTTGCTTGTACAATTGGGACCCCCTTTCAATTGCATGAATTGGAAGTGTCCAGAATGGGGGAGAAAGGTAAAAGAAAAACAACACATAAATGAAGGTGATTTTCTCTTGGGATTGAT

Coding sequences of Glyma14g16200

Limit To All Plant Sequences

>Glyma14g16200.3   sequence type=CDS   gene model=Glyma14g16200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCCACAATCATCGTCTTTGAATCCATATGCAACGTCATATGTTCCTCTCTCTAAAAGGGGGGTAGATGGTAGAACACCTTCGACTGAAAAAGATTCCAAGACTTATAATGGGACAGTATGGTTTCAGACTCATCAGGGTGCCACAAATGATCCACAACTTATCAACACTAGCTTGGAAAGGCTCTCGAAATCCGAATCTTTTCTGGCAAAAGGCCAGCCTGCTTCTAGTTCCTACACAGGCTACACTTCATCACAGAATGTGGCAGAGTTATCGGATAATCAGTTGCTAGATGAAGAAGTTGATATGGATTTGGAGTATCTTAGGATGAATTTTCCTGGTATATCTTATCAGTCCCTTGTAGATGTCTATAATGTAAACAGTGGTGACTTGGATGCTGCTATTGACATGCTCAGCCAACTTGAGTTGGAGGGAGATGAAACTTCTGGAATTCTTCCAGAGACACTGGATATTGGTGACGTTTCAGAGTCCGGATTGCCAGCTGATTCTGCTTCACTAAAACAGAAGAATGTAGCAGAGGAAACCAACACTTCATCTAGTCACATGGCATCAGCCAATGTCTTGTGA

>Glyma14g16200.4   sequence type=CDS   gene model=Glyma14g16200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCCACAATCATCGTCTTTGAATCCATATGCAACGTCATATGTTCCTCTCTCTAAAAGGGGGGTAGATGGTAGAACACCTTCGACTGAAAAAGATTCCAAGACTTATAATGGGACAGTATGGTTTCAGACTCATCAGGGTGCCACAAATGATCCACAACTTATCAACACTAGCTTGGAAAGGCTCTCGAAATCCGAATCTTTTCTGGCAAAAGGCCAGCCTGCTTCTAGTTCCTACACAGGCTACACTTCATCACAGAATGTGGCAGAGTTATCGGATAATCAGTTGCTAGATGAAGAAGTTGATATGGATTTGGAGTATCTTAGGATGAATTTTCCTGGTATATCTTATCAGTCCCTTGTAGATGTCTATAATGTAAACAGTGGTGACTTGGATGCTGCTATTGACATGCTCAGCCAACTTGAGTTGGAGGGAGATGAAACTTCTGGAATTCTTCCAGAGACACTGGATATTGGTGACGTTTCAGAGTCCGGATTGCCAGCTGATTCTGCTTCACTAAAACAGAAGAATGTAGCAGAGGAAACCAACACTTCATCTAGTCACATGGCATCAGCCAATGTCTTGTGA

>Glyma14g16200.5   sequence type=CDS   gene model=Glyma14g16200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCCACAATCATCGTCTTTGAATCCATATGCAACGTCATATGTTCCTCTCTCTAAAAGGGGGGTAGATGGTAGAACACCTTCGACTGAAAAAGATTCCAAGACTTATAATGGGACAGTATGGTTTCAGACTCATCAGGGTGCCACAAATGATCCACAACTTATCAACACTAGCTTGGAAAGGCTCTCGAAATCCGAATCTTTTCTGGCAAAAGGCCAGCCTGCTTCTAGTTCCTACACAGGCTACACTTCATCACAGAATGTGGCAGAGTTATCGGATAATCAGTTGCTAGATGAAGAAGTTGATATGGATTTGGAGTATCTTAGGATGAATTTTCCTGGTATATCTTATCAGTCCCTTGTAGATGTCTATAATGTAAACAGTGGTGACTTGGATGCTGCTATTGACATGCTCAGCCAACTTGAGTTGGAGGGAGATGAAACTTCTGGAATTCTTCCAGAGACACTGGATATTGGTGACGTTTCAGAGTCCGGATTGCCAGCTGATTCTGCTTCACTAAAACAGAAGAATGTAGCAGAGGAAACCAACACTTCATCTAGTCACATGGCATCAGCCAATGTCTTGTGA

Predicted protein sequences of Glyma14g16200

Limit To All Plant Sequences

>Glyma14g16200.3   sequence type=predicted peptide   gene model=Glyma14g16200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPQSSSLNPYATSYVPLSKRGVDGRTPSTEKDSKTYNGTVWFQTHQGATNDPQLINTSLERLSKSESFLAKGQPASSSYTGYTSSQNVAELSDNQLLDEEVDMDLEYLRMNFPGISYQSLVDVYNVNSGDLDAAIDMLSQLELEGDETSGILPETLDIGDVSESGLPADSASLKQKNVAEETNTSSSHMASANVL*

>Glyma14g16200.4   sequence type=predicted peptide   gene model=Glyma14g16200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPQSSSLNPYATSYVPLSKRGVDGRTPSTEKDSKTYNGTVWFQTHQGATNDPQLINTSLERLSKSESFLAKGQPASSSYTGYTSSQNVAELSDNQLLDEEVDMDLEYLRMNFPGISYQSLVDVYNVNSGDLDAAIDMLSQLELEGDETSGILPETLDIGDVSESGLPADSASLKQKNVAEETNTSSSHMASANVL*

>Glyma14g16200.5   sequence type=predicted peptide   gene model=Glyma14g16200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPQSSSLNPYATSYVPLSKRGVDGRTPSTEKDSKTYNGTVWFQTHQGATNDPQLINTSLERLSKSESFLAKGQPASSSYTGYTSSQNVAELSDNQLLDEEVDMDLEYLRMNFPGISYQSLVDVYNVNSGDLDAAIDMLSQLELEGDETSGILPETLDIGDVSESGLPADSASLKQKNVAEETNTSSSHMASANVL*

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