Report for Sequence Feature Glyma14g15370
Feature Type: gene_model
Chromosome: Gm14
Start: 16293779
stop: 16295589
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma14g15370
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G18790 AT
Annotation by Michelle Graham. TAIR10: Ribosomal protein L33 family protein | chr5:6266324-6266500 REVERSE LENGTH=58
SoyBase E_val: 2.00E-25 ISS
GO:0006412 GO-bp
Annotation by Michelle Graham. GO Biological Process: translation
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005840 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: ribosome
SoyBase N/A ISS
GO:0015934 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit
SoyBase N/A ISS
GO:0003735 GO-mf
Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome
SoyBase N/A ISS
KOG3505
KOG
Mitochondrial/chloroplast ribosomal protein L33-like
JGI ISS
PTHR15238 Panther
FAMILY NOT NAMED
JGI ISS
PF00471 PFAM
Ribosomal protein L33
JGI ISS
UniRef100_C6TLC5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TLC5_SOYBN
SoyBase E_val: 1.00E-32 ISS
UniRef100_G7I920 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L33 n=1 Tax=Medicago truncatula RepID=G7I920_MEDTR
SoyBase E_val: 2.00E-31 ISS
Expression Patterns of Glyma14g15370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma14g15370
Paralog Evidence Comments
Glyma17g31050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma14g15370 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma14g15370
Coding sequences of Glyma14g15370
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma14g15370.1 sequence type=CDS gene model=Glyma14g15370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGACAAGAAGAAGAAGGCTCAGATGTTTGTAAAGCTAGTGTCTGCTGCTGGGACTGGATTCTTTTATGTTAAGCGGAAGCCAAGGCAGTTTACAGAGAAGCTTGAGTTCCGAAAATATGATCCTAGGGTTAATCGTCATGTTCTGTTTACAGAGGCTAAAATGAAGTGA
Predicted protein sequences of Glyma14g15370
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma14g15370.1 sequence type=predicted peptide gene model=Glyma14g15370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKYDPRVNRHVLFTEAKMK*