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Report for Sequence Feature Glyma14g15345

Feature Type:gene_model
Chromosome:Gm14
Start:16288421
stop:16291416
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g15345
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G25610AT Annotation by Michelle Graham. TAIR10: ATPase, F0/V0 complex, subunit C protein | chr2:10901585-10902494 REVERSE LENGTH=178 SoyBaseE_val: 3.00E-107ISS
GO:0015991GO-bp Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0033177GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting two-sector ATPase complex, proton-transporting domain SoyBaseN/AISS
GO:0033179GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting V-type ATPase, V0 domain SoyBaseN/AISS
GO:0015078GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transmembrane transporter activity SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
KOG0233 KOG Vacuolar H+-ATPase V0 sector, subunit c'' JGI ISS
PTHR10263Panther VACUOLAR ATP SYNTHASE PROTEOLIPID SUBUNIT JGI ISS
PTHR10263:SF1Panther VACUOLAR ATP SYNTHASE PROTEOLIPID SUBUNIT JGI ISS
PF00137PFAM ATP synthase subunit C JGI ISS
UniRef100_C6T3I8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3I8_SOYBN SoyBaseE_val: 1.00E-115ISS
UniRef100_Q84V02UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar membrane ATPase subunit c'' n=1 Tax=Citrus limon RepID=Q84V02_CITLI SoyBaseE_val: 8.00E-108ISS

Expression Patterns of Glyma14g15345
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g15345 not represented in the dataset
Glyma14g15345 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g15345
ParalogEvidenceComments
Glyma17g31060 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g15345 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g127600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g15345
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g15345
>Glyma14g15345.1   sequence type=CDS   gene model=Glyma14g15345   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCACATTCGAGTTCTTGGGGCAGGGCACTCGTGGCCATCTCGCCCTATACCTTCTCTGCCATCGGCATCGCCGTCGCTATCGGCGTCTCCGTTCTCGGCGCCGCCTGGGGGATCTACATCACCGGTAGTAGCTTGATCGGCGCTGCAATCAGGGCTCCTCGAATCACTTCCAAAAATCTCATTAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGTTATTGTGGCTATTATTCTTCAAACAAAATTAGAAAGTGTTCCAGCATCAAATATCTATGCACCTGAGTCTCTTAGGGCTGGATATGCAATCTTTGCATCGGGATTAATCGTGGGCTTTGCAAATCTTGTTTGTGGGTTGTGTGTAGGAATAATTGGAAGCAGCTGTGCATTGTCTGATGCCCAGAACTCTTCTCTCTTTGTGAAAATTCTTGTGATTGAGATCTTTGGTAGTGCGCTGGGGCTATTCGGAGTTATTGTCGGAATTATTATGTCAGCTCAAGCAACATGGCCGACAAAAGTTTAG
Predicted protein sequences of Glyma14g15345
>Glyma14g15345.1   sequence type=predicted peptide   gene model=Glyma14g15345   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAHSSSWGRALVAISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIRAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASNIYAPESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPTKV*






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