SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G25450 | AT | Annotation by Michelle Graham. TAIR10: Cytochrome bd ubiquinol oxidase, 14kDa subunit | chr5:8857036-8857849 FORWARD LENGTH=122 | SoyBase | E_val: 2.00E-68 | ISS |
| GO:0006122 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrial electron transport, ubiquinol to cytochrome c | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005750 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex III | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008121 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquinol-cytochrome-c reductase activity | SoyBase | N/A | ISS |
| KOG3440 | KOG | Ubiquinol cytochrome c reductase, subunit QCR7 | JGI | ISS | |
| PTHR12022 | Panther | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN | JGI | ISS | |
| PF02271 | PFAM | Ubiquinol-cytochrome C reductase complex 14kD subunit | JGI | ISS | |
| UniRef100_C6SXJ9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXJ9_SOYBN | SoyBase | E_val: 7.00E-83 | ISS |
| UniRef100_F1CFB5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquinol-cytochrome C reductase complex n=1 Tax=Camellia sinensis RepID=F1CFB5_CAMSI | SoyBase | E_val: 6.00E-68 | ISS |
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Glyma14g15170 not represented in the dataset |
Glyma14g15170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g31280 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g126300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g15170.1 sequence type=CDS gene model=Glyma14g15170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCGTTTCTTCAATGGTTTCTGGATCCGAAGAAGAACTGGTTCGCCGCTCAGCACATGAAATCCCTCTCCAGACGGCTTCGCAAATACGGGCTCCGATATGACGATTTGTACGATCCTTACTACGATCTAGATGTGAAGGAGGCGCTGAATCGGCTTCCGAAAGAGGTGGTGGACGCTCGCCACGCGCGTCTTAAACGCGCCATCGATCTTTCCATGAAGCACGAGTACCTCCCTGACAATCTTCAGGCAATGCAAACACCATTCAGGGGCTACCTTCAGGATATGCTGACTCTTGTGAAGAGGGAGAGAGCCGAACGTGAAGCATTGGGAGGTTTGCCCCTATATCAACGATCCATTCCTTGA
>Glyma14g15170.1 sequence type=predicted peptide gene model=Glyma14g15170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASFLQWFLDPKKNWFAAQHMKSLSRRLRKYGLRYDDLYDPYYDLDVKEALNRLPKEVVDARHARLKRAIDLSMKHEYLPDNLQAMQTPFRGYLQDMLTLVKRERAEREALGGLPLYQRSIP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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