Glyma14g14400 - SoyBase

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Report for Sequence Feature Glyma14g14400

Feature Type:	gene_model
Chromosome:	Gm14
Start:	14418176
stop:	14424287
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g14400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32330	AT	Annotation by Michelle Graham. TAIR10: TPX2 (targeting protein for Xklp2) protein family \| chr4:15609801-15611867 FORWARD LENGTH=437	SoyBase	E_val: 2.00E-75	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF06886	PFAM	Targeting protein for Xklp2 (TPX2)	JGI		ISS
UniRef100_G7I707	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Seed specific protein Bn15D14A n=1 Tax=Medicago truncatula RepID=G7I707_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M9J3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9J3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g14400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g14400

Paralog	Evidence	Comments
Glyma17g31990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g14400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g116600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g14400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g14400

Limit To All Plant Sequences

>Glyma14g14400.4   sequence type=transcript   gene model=Glyma14g14400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGAAAAACCGTATAGTCTGACCCTGTCTCTGTGTCTCTGTCTGTGTGACCCATTCACTCTCTCACTCGCCATTTCCAGTAAGAGAGAGTGACTTCACTTTCAATCCCATTTCAAAACCGCTCCTTCTCCTAATTATAAATCTTCTCTCTTTCTCTTTTTCTCTCTCTTCTTCGTCTTCTGTTTTTTTTTTCTTTCTAAAATGTAAAGAAAACAGTTTTCAATCAGCAAAATCTACAGTTTCAATCTTTCGGATCTTGTTGGTGTTGTGTGGATCCTTGGATCGTGATCCTCTACTCAATCCTCATTCTGGTCGGTTCTCTTTCTGGGGTTTTAGATCTCTTTGTTCTGTGCACTTCAAGTCGCTGCTTGCGTCAGTGGTGTTTCAGTGTCCTCCTTTTCATGGCATTTTGACTACCCTTTTGCCAGGTCTTCTACATTGTCATTTCACTCCTATTTTCTTCTTCAAGTGGGCTAGTGTGAGTGATGGATCCAATTAACATTTTACCTGCTGATGGGGTTGAAGTGGTTCACCAAAATGGTGTTCATGATGAACCTTCAAATTCTGGAGAGGATGGTGGCGTTTCATATGATTTAGACCCCAGTGTTCCTGAAACTGCAGCAACTGTAGCTCCAAATGGGAACTTTGATAATTTTCATCAGTCAGATAGTGCTGCATCTGATAACTCATTAGTGGCCGAAATCAAAGAATCAAATGTCAACATTGATGGCACTAATATGACCATTCCTAAGGAAGAGGAAGTGAAAATATCAGATCAAACAAAGCAATCAAGAGCACCAAAGGGTCTTGTCAAGAACAAGAACGCAAAGGCTCCAAGTTCCAGTGGTGTTCATGCAAGTTTGGTGAATAAGAGCCAAATTGGAAAAGATAAAGAAGCATCTTCATCTGTTTCAAATGGTTCTTCAGCTTTAGACTCCCTCCCAAGACAGTCTATTAAAGGCAGCAGATCTTTCAATGACCGGCAGACGCAATTGTCCAAGCCTAAGCACCCTTCAAAGTCTGATGCAGCATCTTCTGAAGTATCAGTGGAGAAGACAAAACCAAAATCATTGAGAAAAGGACCCATTGATAAAGTTCAAGGAGAAGGAGAATCTTCCTTAAGTACCAACACAGACGATTCCAAACCTCAAAGGGTGGGGACACTTCCAAATTATGGATTCAGTTTTAAGTGTGGTGAAAGAGCTGAGAGGAGAAAAGAGTTCTACAATAAGCTTGAGGAGAGAATTCAGGCAAAGGAGGTGGAGAAGAGTAACTTGCAAGCAAAAACCAAGGAGACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGGAGCTAAAGAAGATACCAACTACAAGAGCAAAATCACCCAAGCTTGGTCGTAAGAAGAGTACAGCAAATTCAGAGTCAGATGGCAACAATAGCAGCAGTTCACGACTAGCTCGTTTAAGTTTGGATGAGAAAGTGTCAGAGAGTAATCCCACTAAGGGACCTACTCCTCCTGTCCATCAAAAGAAGCCGCAACGAAGATCTCTTCCTGCTCGACTGGCTTCTGAAGGGAACAGTGTATCAAATTCAAGAACTGCACTGACTTCATCCAAGGCAGCTATCAAAGATGAAAAGTCTTCCTTATCTAGTGCTGCTAAAAAAGATAACAACTTAACCAATGCTACAGGAGAAGCCAAAACCATGACGATTGCAGCAAATGAAGAGAAAAGTACCTTGTCCAGTGAAACAAGTGCTGTTATGCCGCTGAATTTGATTCCTTCAGATAAGCTAAGTGAAGAAGAGTCTCATGTGAATGGTGACATAGCAGTCAAAGAGTATTCTCAGCTCTCCTTGGAACAAGAACCTATCGCGGCGGAGCGTTGAGCAAAACAGCAGGTTACTTTCTGAGAATTTGATTCATCTGGTGAGATATTATAGAAGCATATGACTGAGATTATTTGAGAATGAAGAAGGCTTGCAGATTTGCATTATGGTTTGTGTTGTCAATTGTCATCATGATGTCCAAGCAGCATTGTTTCTTTATGTGTTTACCGACTCTCAATCTTGCCAGTCCAGTCCTCATTCTCTTTCGTGCTTGCAGCAATGTGTACTTAACAATTTGCCTGGTTATTCTAGTTGATGTTAGTCTGGTATATGTGCAGCACTTGTCTGTTTAGTGAACATTTATTTGGAGGAAAATTTTGAGAAAGTTTGCCATCTGTTGATAGTTCAAGGGCTTCTTGTTCAGGCCGTTACCTTAAACAAATTTGACATTGTCTCATGTACAAGCTGTTTGTGTTGTGGACACCCTTCTAGCTGAATCCATATGGATCAAATTCTGCTTTGTCGTACAGCTTTGGTTTGTCATGGATCAAATTCTTCTGTTACTATAAGAATTCAGTTTCTGCTCCCATTGGTAGTACATTTTGGCTATTAACCGTTCCTTATGCACCCTGTGCAATAAGGCCATTAAGTACAATTTTTCTTTCTCTATATCCTTATCTTAAAATTAGGTAATGAATTTTTCTTATAAT

Coding sequences of Glyma14g14400

Limit To All Plant Sequences

>Glyma14g14400.3   sequence type=CDS   gene model=Glyma14g14400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCAATTAACATTTTACCTGCTGATGGGGTTGAAGTGGTTCACCAAAATGGTGTTCATGATGAACCTTCAAATTCTGGAGAGGATGGTGGCGTTTCATATGATTTAGACCCCAGTGTTCCTGAAACTGCAGCAACTGTAGCTCCAAATGGGAACTTTGATAATTTTCATCAGTCAGATAGTGCTGCATCTGATAACTCATTAGTGGCCGAAATCAAAGAATCAAATGTCAACATTGATGGCACTAATATGACCATTCCTAAGGAAGAGGAAGTGAAAATATCAGATCAAACAAAGCAATCAAGAGCACCAAAGGGTCTTGTCAAGAACAAGAACGCAAAGGCTCCAAGTTCCAGTGGTGTTCATGCAAGTTTGGTGAATAAGAGCCAAATTGGAAAAGATAAAGAAGCATCTTCATCTGTTTCAAATGGTTCTTCAGCTTTAGACTCCCTCCCAAGACAGTCTATTAAAGGCAGCAGATCTTTCAATGACCGGCAGACGCAATTGTCCAAGCCTAAGCACCCTTCAAAGTCTGATGCAGCATCTTCTGAAGTATCAGTGGAGAAGACAAAACCAAAATCATTGAGAAAAGGACCCATTGATAAAGTTCAAGGAGAAGGAGAATCTTCCTTAAGTACCAACACAGACGATTCCAAACCTCAAAGGGTGGGGACACTTCCAAATTATGGATTCAGTTTTAAGTGTGGTGAAAGAGCTGAGAGGAGAAAAGAGTTCTACAATAAGCTTGAGGAGAGAATTCAGGCAAAGGAGGTGGAGAAGAGTAACTTGCAAGCAAAAACCAAGGAGACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGGAGCTAAAGAAGATACCAACTACAAGAGCAAAATCACCCAAGCTTGGTCGTAAGAAGAGTACAGCAAATTCAGAGTCAGATGGCAACAATAGCAGCAGTTCACGACTAGCTCGTTTAAGTTTGGATGAGAAAGTGTCAGAGAGTAATCCCACTAAGGGACCTACTCCTCCTGTCCATCAAAAGAAGCCGCAACGAAGATCTCTTCCTGCTCGACTGGCTTCTGAAGGGAACAGTGTATCAAATTCAAGAACTGCACTGACTTCATCCAAGGCAGCTATCAAAGATGAAAAGTCTTCCTTATCTAGTGCTGCTAAAAAAGATAACAACTTAACCAATGCTACAGGAGAAGCCAAAACCATGACGATTGCAGCAAATGAAGAGAAAAGTACCTTGTCCAGTGAAACAAGTGCTGTTATGCCGCTGAATTTGATTCCTTCAGATAAGCTAAGTGAAGAAGAGTCTCATGTGAATGGTGACATAGCAGTCAAAGAGTATTCTCAGCTCTCCTTGGAACAAGAACCTATCGCGGCGGAGCGTTGA

>Glyma14g14400.4   sequence type=CDS   gene model=Glyma14g14400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCAATTAACATTTTACCTGCTGATGGGGTTGAAGTGGTTCACCAAAATGGTGTTCATGATGAACCTTCAAATTCTGGAGAGGATGGTGGCGTTTCATATGATTTAGACCCCAGTGTTCCTGAAACTGCAGCAACTGTAGCTCCAAATGGGAACTTTGATAATTTTCATCAGTCAGATAGTGCTGCATCTGATAACTCATTAGTGGCCGAAATCAAAGAATCAAATGTCAACATTGATGGCACTAATATGACCATTCCTAAGGAAGAGGAAGTGAAAATATCAGATCAAACAAAGCAATCAAGAGCACCAAAGGGTCTTGTCAAGAACAAGAACGCAAAGGCTCCAAGTTCCAGTGGTGTTCATGCAAGTTTGGTGAATAAGAGCCAAATTGGAAAAGATAAAGAAGCATCTTCATCTGTTTCAAATGGTTCTTCAGCTTTAGACTCCCTCCCAAGACAGTCTATTAAAGGCAGCAGATCTTTCAATGACCGGCAGACGCAATTGTCCAAGCCTAAGCACCCTTCAAAGTCTGATGCAGCATCTTCTGAAGTATCAGTGGAGAAGACAAAACCAAAATCATTGAGAAAAGGACCCATTGATAAAGTTCAAGGAGAAGGAGAATCTTCCTTAAGTACCAACACAGACGATTCCAAACCTCAAAGGGTGGGGACACTTCCAAATTATGGATTCAGTTTTAAGTGTGGTGAAAGAGCTGAGAGGAGAAAAGAGTTCTACAATAAGCTTGAGGAGAGAATTCAGGCAAAGGAGGTGGAGAAGAGTAACTTGCAAGCAAAAACCAAGGAGACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGGAGCTAAAGAAGATACCAACTACAAGAGCAAAATCACCCAAGCTTGGTCGTAAGAAGAGTACAGCAAATTCAGAGTCAGATGGCAACAATAGCAGCAGTTCACGACTAGCTCGTTTAAGTTTGGATGAGAAAGTGTCAGAGAGTAATCCCACTAAGGGACCTACTCCTCCTGTCCATCAAAAGAAGCCGCAACGAAGATCTCTTCCTGCTCGACTGGCTTCTGAAGGGAACAGTGTATCAAATTCAAGAACTGCACTGACTTCATCCAAGGCAGCTATCAAAGATGAAAAGTCTTCCTTATCTAGTGCTGCTAAAAAAGATAACAACTTAACCAATGCTACAGGAGAAGCCAAAACCATGACGATTGCAGCAAATGAAGAGAAAAGTACCTTGTCCAGTGAAACAAGTGCTGTTATGCCGCTGAATTTGATTCCTTCAGATAAGCTAAGTGAAGAAGAGTCTCATGTGAATGGTGACATAGCAGTCAAAGAGTATTCTCAGCTCTCCTTGGAACAAGAACCTATCGCGGCGGAGCGTTGA

Predicted protein sequences of Glyma14g14400

Limit To All Plant Sequences

>Glyma14g14400.3   sequence type=predicted peptide   gene model=Glyma14g14400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPINILPADGVEVVHQNGVHDEPSNSGEDGGVSYDLDPSVPETAATVAPNGNFDNFHQSDSAASDNSLVAEIKESNVNIDGTNMTIPKEEEVKISDQTKQSRAPKGLVKNKNAKAPSSSGVHASLVNKSQIGKDKEASSSVSNGSSALDSLPRQSIKGSRSFNDRQTQLSKPKHPSKSDAASSEVSVEKTKPKSLRKGPIDKVQGEGESSLSTNTDDSKPQRVGTLPNYGFSFKCGERAERRKEFYNKLEERIQAKEVEKSNLQAKTKETQEAEIKMLRKSLNFKATPMPSFYQEPAPAKAELKKIPTTRAKSPKLGRKKSTANSESDGNNSSSSRLARLSLDEKVSESNPTKGPTPPVHQKKPQRRSLPARLASEGNSVSNSRTALTSSKAAIKDEKSSLSSAAKKDNNLTNATGEAKTMTIAANEEKSTLSSETSAVMPLNLIPSDKLSEEESHVNGDIAVKEYSQLSLEQEPIAAER*

>Glyma14g14400.4   sequence type=predicted peptide   gene model=Glyma14g14400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPINILPADGVEVVHQNGVHDEPSNSGEDGGVSYDLDPSVPETAATVAPNGNFDNFHQSDSAASDNSLVAEIKESNVNIDGTNMTIPKEEEVKISDQTKQSRAPKGLVKNKNAKAPSSSGVHASLVNKSQIGKDKEASSSVSNGSSALDSLPRQSIKGSRSFNDRQTQLSKPKHPSKSDAASSEVSVEKTKPKSLRKGPIDKVQGEGESSLSTNTDDSKPQRVGTLPNYGFSFKCGERAERRKEFYNKLEERIQAKEVEKSNLQAKTKETQEAEIKMLRKSLNFKATPMPSFYQEPAPAKAELKKIPTTRAKSPKLGRKKSTANSESDGNNSSSSRLARLSLDEKVSESNPTKGPTPPVHQKKPQRRSLPARLASEGNSVSNSRTALTSSKAAIKDEKSSLSSAAKKDNNLTNATGEAKTMTIAANEEKSTLSSETSAVMPLNLIPSDKLSEEESHVNGDIAVKEYSQLSLEQEPIAAER*

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