Glyma14g14380 - SoyBase

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Report for Sequence Feature Glyma14g14380

Feature Type:	gene_model
Chromosome:	Gm14
Start:	14349123
stop:	14352657
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g14380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11760	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:3718529-3721123 FORWARD LENGTH=702	SoyBase	E_val: 3.00E-90	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7JB14	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SYNC1 protein n=1 Tax=Medicago truncatula RepID=G7JB14_MEDTR	SoyBase	E_val: 7.00E-165	ISS
UniRef100_UPI000233BCBF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BCBF related cluster n=1 Tax=unknown RepID=UPI000233BCBF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g14380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g14380

Paralog	Evidence	Comments
Glyma17g32011	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g14380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g116400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g14380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g14380

Limit To All Plant Sequences

>Glyma14g14380.1   sequence type=CDS   gene model=Glyma14g14380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAAGGTGATGGAGTATTGGAGACCGTGGTTTTGGGGGCACGCCGACAAGTACTACGTTGTTAAGTTGAGCCAATTGAGGTTGAAGTTTGGGCCAACGTTGGATGCTGCAAATGACAAGATAATAGCAATTCAGATTAAGGGAACAGCTACAAAGAAAGGGAAAGTTTCTTCTTCTTCTTCAACTTCCAAAAGCTTTCTTATTCCTTTTCATCGTACCCAGAAACTAGGATCCACTCACACCACCACCTTCCCCCATAGGTTCACCAATTCTAAGGCACCAACAATCGTGTGGGACGCACGTGACCTCTGCGACTTTCATCTCGTCCTCAAACACGGCACGTGCTACATGACACTTCATGTCTTACATGCGGAGGGTGATATAGGAGAATATAAATCTGAAATGGTGGTGGTTGGAGAAGTTTCCATGAGCGTTACTATGGCTGAGTTTATGGAAGGGGAGGAGATGAAGAATGAGTCAAATTCTTGTCAGGTTCAAAGAACACTTCCAATCCAATTGAAGGTGCATGGTTTGTTCATGGAAGAAGCTACACTTTCGGTTTCATTGAGCTTATTGAAACTGAGAAACTTTCATGACGACTTGCCAAGAGCATTTGTAAACAAAGTGACAAGCCTTGAGGACAAAAATAATGGGAAAGTTGTTGATCAAGTTGAGGAACCAAGCCCTTATGAATGGGACGAGTTATCTGTGTATGACTCAGATGACTCATCTGATAAGTCCACCACTACAACCACAAGCAGCAGCAGCAGCAGCAGCACTAGCACTGCAATTCACTGTGAAGGGTCAAGTGTTACAAATGGGTCAGAGAGGTTTGTGGCCTCAGATTCAGAGACCCTTTTGGACACAATGCAGAGGAGTTGGTCCATGTTGCCATGGAATAGAAGCTTCAAGGGATGGAGTTTTAAAAGAACCTCCTCAAGGAAACAAGAGCCTTTGACCTCACATTCAAGTCATTCCATGGGACCATACTTTGATCACAATAAATGCAGCGCAAGTGGGTGGGAAACTAGGGAACTTAGGAGTAGAGATGCGCAAGCAATGCTCAAAACTAATGTGTTCTTTGCTTCCTTTGACCAAAGGAGCAAACAAGCATGTGGTGAGAGTGCATGTACAGCACTAGCAGTGTGCATAGCTCACTGGCTTCATTCCAACCATAACATGCCAACAAGGTCCCAATTTGACAGCCTCATCAAAAGGGGTTCCTCTGAATGGAGAAGGCTAAGCCACAGTGATCACTACCTAAAGCTTTTCCCAGATAAGCATTTTGATCTAGAGACAGTCTTGGAAGCCAACATTAGGCCTCTAGTTGTTACCCCTCAAAACTCCTACACAGGATTTTTCTCCCCTGAGAAGTTTCAGTGCTTGGAAGGAGCCATGTCCTTTGATGACATTTGGGATGAGATAACTAGAAATGATGATGTGGTTGATCATGAGCCAAGAATTTACATAGTGAGTTGGAATGACCATTTCTTTGTTCTGAAGGTGGAAGTTGATGCTTGTTATGTGATTGACACCTTGGGGGAGAGGCTTTTTGAGGGATGCAGAAAGGCTTTCATATTGAAGTTTGATGGTTCAAGTTTGATGCATGCAAAGGGAAGTAAGAAAGAAAGAGGTGAGATAGTTTGCAAAGGAAAAGAGTGTTGTAAAGAGTTCATCAAACGCTTTCTTGCTGCCATACCACTTAGGCAACTAGAAGAGGAAGAGCGAAATAAAGGGACTGTTTATAATCCTTATTTTCACAGGAAATTGCAGATTGACCTCCATTATAGTTTGTTATCATCCTTGTCTTCAGCTTCTTCTATTGGTGAACCTTTATAA

Predicted protein sequences of Glyma14g14380

Limit To All Plant Sequences

>Glyma14g14380.1   sequence type=predicted peptide   gene model=Glyma14g14380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKVMEYWRPWFWGHADKYYVVKLSQLRLKFGPTLDAANDKIIAIQIKGTATKKGKVSSSSSTSKSFLIPFHRTQKLGSTHTTTFPHRFTNSKAPTIVWDARDLCDFHLVLKHGTCYMTLHVLHAEGDIGEYKSEMVVVGEVSMSVTMAEFMEGEEMKNESNSCQVQRTLPIQLKVHGLFMEEATLSVSLSLLKLRNFHDDLPRAFVNKVTSLEDKNNGKVVDQVEEPSPYEWDELSVYDSDDSSDKSTTTTTSSSSSSSTSTAIHCEGSSVTNGSERFVASDSETLLDTMQRSWSMLPWNRSFKGWSFKRTSSRKQEPLTSHSSHSMGPYFDHNKCSASGWETRELRSRDAQAMLKTNVFFASFDQRSKQACGESACTALAVCIAHWLHSNHNMPTRSQFDSLIKRGSSEWRRLSHSDHYLKLFPDKHFDLETVLEANIRPLVVTPQNSYTGFFSPEKFQCLEGAMSFDDIWDEITRNDDVVDHEPRIYIVSWNDHFFVLKVEVDACYVIDTLGERLFEGCRKAFILKFDGSSLMHAKGSKKERGEIVCKGKECCKEFIKRFLAAIPLRQLEEEERNKGTVYNPYFHRKLQIDLHYSLLSSLSSASSIGEPL*

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