Glyma14g14350 - SoyBase

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Report for Sequence Feature Glyma14g14350

Feature Type:	gene_model
Chromosome:	Gm14
Start:	14280062
stop:	14283719
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g14350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32270	AT	Annotation by Michelle Graham. TAIR10: Ubiquitin-like superfamily protein \| chr4:15575015-15576360 REVERSE LENGTH=239	SoyBase	E_val: 3.00E-47	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR14942	Panther	FAMILY NOT NAMED	JGI		ISS
UniRef100_G7I716	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U11/U12 small nuclear ribonucleoprotein 25 kDa protein n=1 Tax=Medicago truncatula RepID=G7I716_MEDTR	SoyBase	E_val: 3.00E-95	ISS
UniRef100_I1M9I7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9I7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g14350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g14350

Paralog	Evidence	Comments
Glyma17g32040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g14350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g116100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g14350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g14350

Limit To All Plant Sequences

>Glyma14g14350.2   sequence type=transcript   gene model=Glyma14g14350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAGAGAAGATGAAAATAGAAATTGCCTGTGAAGAAGTTCAGTTATCGTGAACAAAGTCCCAAAACTAAGCCCATGCCCAAGCCCCATGGAAATAGACCGTTGCCGGTTTGTGCAACGGTTTTCTTCATTCCCCTCTCTTCCTCGATACAAAAGGCACTCTCTCTCTGTTTCACTCTGGACCGAATTAGAATCTCCCCGACAGAAGCAGCATCAACCAAACCACACTCCCAAAGGCGAAACCCTAACTCCATTTGCACAATGCGTGTCGTTCTGCTCCAAGAATCTCTCCCTCTCCATTATTCTATAAACTCCTTCCCACGCTTCTTCACGCTCTAATTGCATCCCACTATGGCCACCACCGAGCACGAAAAACAGTTAATAGTGGCCAACCCTAACCCTAACCCTAACACCAAGACCCCTCGCCGATCCTCCTCCTCCTCCTCCTCGCTCGCCATTTTCGCGAGGAAAAGCTTCTTCTACGACAGGCTCCCCTCCCAACCCCTCAGACTCACCGTCCTCAAACTCGACGGTTCATGCTTCCATATTCAAGTTTCGAAGATGGCCACCGTTGCGGAACTGAAGGACGCGGTGGAGGCCGTGTTTAGTCACGTGCCTCACAAGGGGCCAGCAAAAATTTCATGGGCGCATGTTTGGGGGCAATTTTGTTTATGCTATGATGGACAGAAGCTAGTTACGGAGAAGGATTATCTTCGAAATTATGGCATCAAGGATGGTGACCAGCTCCGTTTCATCCGCCATGTCACAAACAATTGCTGTGTTCAAAGAAAGCGGTTGAAGAAAAGAGTTGTCTATTTGAAACAACACAGGAGGTGCAGGTCATTGCAAGTGGATGGCCATCTACCGAAAGGAAATTGTGATGATAATGACATTGGTTCTGATGATGAAGCCACAGATAGTGGGAAGATCAAGCACCATATTGAAGAAGAGGAAGAAGAAGAAGAAAGGGAAGAAGAGTGCGTTGGAAAGAACAAATTAGCTGGCTTTTTGGGAGACTTGTTCTCATACACTCCACTAGCAGTTGTGAGAAGAACTAGAACTAAAAGCAGGATTTGGCCAACCACTATGCCCAAATGTTTACTTGGTAGTCTTCGAAAGATTAGAAGTATCGTATGCTTTGGCAGGAGGAGGCACTATTCTCGGAGACTTCCATGGAGACCGCATTAACAAATGTGTTTTCTAACCGCACAACATATCCAATGATGCTAGCAGCAAGATGAAAGCTGAGATGTGAAAATTTTGGTTCCTATGCAAATGATGTGCGTGTGAAAATTGTATTGCTGTTTTGATTGAGACGGCAGCAAGATGATGTAGATATTGCATCTTTTTTAATGGTTCTATTGTATAAACAAAACGGTTTGGGGTTGGAGAGTTTCCAATGTGCATGCGTCCGTAGGTTCTTAGGATTAGAAACATCAATGTCTTCATCAGTGATATTTTGAAGTCATTCGTTGTCACGAAAAAAAAAGAATTTACTTCTGAACTTTAATGATTGTCGGTTAATATTATCCTTAAATCTGGACACAGGGTCGCACATCGTCCCTCACTTATGGATGGTAATTAAATTTAG

Coding sequences of Glyma14g14350

Limit To All Plant Sequences

>Glyma14g14350.1   sequence type=CDS   gene model=Glyma14g14350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCACCGAGCACGAAAAACAGTTAATAGTGGCCAACCCTAACCCTAACCCTAACACCAAGACCCCTCGCCGATCCTCCTCCTCCTCCTCCTCGCTCGCCATTTTCGCGAGGAAAAGCTTCTTCTACGACAGGCTCCCCTCCCAACCCCTCAGACTCACCGTCCTCAAACTCGACGGTTCATGCTTCCATATTCAAGTTTCGAAGATGGCCACCGTTGCGGAACTGAAGGACGCGGTGGAGGCCGTGTTTAGTCACGTGCCTCACAAGGGGCCAGCAAAAATTTCATGGGCGCATGTTTGGGGGCAATTTTGTTTATGCTATGATGGACAGAAGCTAGTTACGGAGAAGGATTATCTTCGAAATTATGGCATCAAGGATGGTGACCAGCTCCGTTTCATCCGCCATGTCACAAACAATTGCTGTGTTCAAAGAAAGCGGTTGAAGAAAAGAGTTGTCTATTTGAAACAACACAGGAGGTCATTGCAAGTGGATGGCCATCTACCGAAAGGAAATTGTGATGATAATGACATTGGTTCTGATGATGAAGCCACAGATAGTGGGAAGATCAAGCACCATATTGAAGAAGAGGAAGAAGAAGAAGAAAGGGAAGAAGAGTGCGTTGGAAAGAACAAATTAGCTGGCTTTTTGGGAGACTTGTTCTCATACACTCCACTAGCAGTTGTGAGAAGAACTAGAACTAAAAGCAGGATTTGGCCAACCACTATGCCCAAATGTTTACTTGGTAGTCTTCGAAAGATTAGAAGTATCGTATGCTTTGGCAGGAGGAGGCACTATTCTCGGAGACTTCCATGGAGACCGCATTAA

>Glyma14g14350.2   sequence type=CDS   gene model=Glyma14g14350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCACCGAGCACGAAAAACAGTTAATAGTGGCCAACCCTAACCCTAACCCTAACACCAAGACCCCTCGCCGATCCTCCTCCTCCTCCTCCTCGCTCGCCATTTTCGCGAGGAAAAGCTTCTTCTACGACAGGCTCCCCTCCCAACCCCTCAGACTCACCGTCCTCAAACTCGACGGTTCATGCTTCCATATTCAAGTTTCGAAGATGGCCACCGTTGCGGAACTGAAGGACGCGGTGGAGGCCGTGTTTAGTCACGTGCCTCACAAGGGGCCAGCAAAAATTTCATGGGCGCATGTTTGGGGGCAATTTTGTTTATGCTATGATGGACAGAAGCTAGTTACGGAGAAGGATTATCTTCGAAATTATGGCATCAAGGATGGTGACCAGCTCCGTTTCATCCGCCATGTCACAAACAATTGCTGTGTTCAAAGAAAGCGGTTGAAGAAAAGAGTTGTCTATTTGAAACAACACAGGAGGTGCAGGTCATTGCAAGTGGATGGCCATCTACCGAAAGGAAATTGTGATGATAATGACATTGGTTCTGATGATGAAGCCACAGATAGTGGGAAGATCAAGCACCATATTGAAGAAGAGGAAGAAGAAGAAGAAAGGGAAGAAGAGTGCGTTGGAAAGAACAAATTAGCTGGCTTTTTGGGAGACTTGTTCTCATACACTCCACTAGCAGTTGTGAGAAGAACTAGAACTAAAAGCAGGATTTGGCCAACCACTATGCCCAAATGTTTACTTGGTAGTCTTCGAAAGATTAGAAGTATCGTATGCTTTGGCAGGAGGAGGCACTATTCTCGGAGACTTCCATGGAGACCGCATTAA

Predicted protein sequences of Glyma14g14350

Limit To All Plant Sequences

>Glyma14g14350.1   sequence type=predicted peptide   gene model=Glyma14g14350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTEHEKQLIVANPNPNPNTKTPRRSSSSSSSLAIFARKSFFYDRLPSQPLRLTVLKLDGSCFHIQVSKMATVAELKDAVEAVFSHVPHKGPAKISWAHVWGQFCLCYDGQKLVTEKDYLRNYGIKDGDQLRFIRHVTNNCCVQRKRLKKRVVYLKQHRRSLQVDGHLPKGNCDDNDIGSDDEATDSGKIKHHIEEEEEEEEREEECVGKNKLAGFLGDLFSYTPLAVVRRTRTKSRIWPTTMPKCLLGSLRKIRSIVCFGRRRHYSRRLPWRPH*

>Glyma14g14350.2   sequence type=predicted peptide   gene model=Glyma14g14350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTEHEKQLIVANPNPNPNTKTPRRSSSSSSSLAIFARKSFFYDRLPSQPLRLTVLKLDGSCFHIQVSKMATVAELKDAVEAVFSHVPHKGPAKISWAHVWGQFCLCYDGQKLVTEKDYLRNYGIKDGDQLRFIRHVTNNCCVQRKRLKKRVVYLKQHRRCRSLQVDGHLPKGNCDDNDIGSDDEATDSGKIKHHIEEEEEEEEREEECVGKNKLAGFLGDLFSYTPLAVVRRTRTKSRIWPTTMPKCLLGSLRKIRSIVCFGRRRHYSRRLPWRPH*

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