Glyma14g14161 - SoyBase

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Report for Sequence Feature Glyma14g14161

Feature Type:	gene_model
Chromosome:	Gm14
Start:	13878521
stop:	13881915
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g14161

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29360	AT	Annotation by Michelle Graham. TAIR10: UDP-glucose 6-dehydrogenase family protein \| chr3:11267375-11268817 REVERSE LENGTH=480	SoyBase	E_val: 2.00E-178	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0007033	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuole organization	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0052546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003979	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucose 6-dehydrogenase activity	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0051287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD binding	SoyBase	N/A	ISS
KOG2666	KOG	UDP-glucose/GDP-mannose dehydrogenase	JGI		ISS
PTHR11374	Panther	UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE	JGI		ISS
PF00984	PFAM	UDP-glucose/GDP-mannose dehydrogenase family, central domain	JGI		ISS
PF03720	PFAM	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain	JGI		ISS
PF03721	PFAM	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain	JGI		ISS
UniRef100_I1JZK3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UDP-glucose 6-dehydrogenase n=1 Tax=Glycine max RepID=I1JZK3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JZK3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose 6-dehydrogenase n=1 Tax=Glycine max RepID=I1JZK3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g14161

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g14161 not represented in the dataset	Glyma14g14161 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g14161 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma14g14161

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g14161

Limit To All Plant Sequences

>Glyma14g14161.1   sequence type=CDS   gene model=Glyma14g14161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGGAAAGAGTTGTTATACTTAGCAAAAACGGCAAGGAGGTCACCCTCGGTGAGATTGAAGGGGATGCCACCGACGAAGACGTAAGCGGAATCCTTGTACTTGGTGTGCCAGGAGGCTTGGTCGCCGATGCCAAGTGCAGCTTCTCTGGCATTGATGTTCTGACTCTACAGGAAATGGAGTTTATTCTAATCCAAACTATTGAGTATGATCAGCATCCACAGCCACCTGGAAGAAGCATTCAAGATTGTCAAAATGTATCATCAGTTGCTGGTAATTCATCAAATTTGGGAACAGCTAATGTAATCCAAGATTACAATGCTTACACATCATACCGAAGTTCTTCTAATCCATATGGTTATGGCAGCATGGGATACTCAGGCTACTATAACAACTATCAGCAGCAACCTAATCATACCTATTCACAGCCTGTAGGAGCATATCAAAACACAGGTGCTCCTTATCAGCCTATTTCCTCCTTTCAGAATACCGGGTCTTATGCTGGATCCGCAAGTTATTCAAGCACTTATTACAATTCTGCTGATTATCAGACTACCGGAGGTTACCATAACAGCAGCGGATATGGAAATCAAGCAACTATGTGGAACAGTGGCAGTTATTTTTCTCATCCCACAGGAAATAATTCCACAGATGAAGTTTCATCTACTTTAGGGACTAATTCCACAAATGAAGTTCCATCTTCTTCAATTAGTCCTGAACCAATAGCAACTACTTTTCTACCAGCATATACTGATCACTTACCATCTCAACCAGTGGTATGTTCTAATCCGGTGATATTTACTCCAGCACCTCCTACTTTAGTGCACTCCAATACAAAATCTCATACTTTACTGGTCAGACTTGATAATACTCATCCAATCTATACAAGGGAAAAAGTTGAGACTAGCCCAAGGTACTTCGTGTCCACTAAAGTAAACAAAGCGGACAATGGTGCTGGCATTGGCAGACAAATGTCTGCAATTAGTTCATCCTCAACTGAACCTATAATTCTAAGGAATTTCCGGTTTTTATCAATTTCAGACATTTGTTATATTGGTCTGCAATCATCTAGTCGTAGGGATTATTTTGAAAATACTACCAAAAATGAAGAAGAAAATCCAGAAAACTGCAGAGATGATATTGAAACTATCAGCCTCCATTCATTTGATTTCATTGCTTCTGCACAACGTCAGCAGTCAAAAGGAATTATTGGGGGGGTGTCACATATGAATAAATTCAACTGCAGCGTTAGAACAGCTGAGGCAATTGAGAAAATTCTATGCCATAATACTAATAGCAAGGGCATCAAGTATCAAATTTTGTCAAATCCTGAGTTTCTCTCTGAGGGAACTGCTATTCAAGATTTTCTAAACCCTGATAGGGTTCTCATTGGAGGGAGCCAATGCCCTGAAGGTTTAGAAGCAATCCAAAAGCTGAAGGCTATATATGCTCATTGGGTGCCTGAAGACAGAATGATAACAACCAATTTGTGGTCAGCAGAACTTTCCAAGTTAGCTGATAATGCCTTTTTGGCACAAAGGATTTCATCTATTAATGCTATCAAAAACACCAAAATTGGACCCAAGTTCCTAAATGCTAGTGTTGGTTTTGGTGGCTCTTGCTTTCAAAAGGACATACTGAACTTGGTGTACATATGTGACAGCAATGGCCTCACTGAAGTGGCTAATTACTGGAAACAAGTGATCAAGGTGAATGACTACCAAAAGAGTCGTTTTGTGAAGCGTGTTGTGACATCGATGTTCAACACGGTTTCGGGTAAGAAGATTGCAATTCTGGGGTTTGCCTTCAAGAAACACACTAGTGACACTAGGAAGACTCCTGCAATTGATGTTTGCAAAGGACTATTGGGGGATAACACGTGCTTGAGCATATACGATCCATGCGTTACTGAGGAGCAGATTCAAAAGGATTTGTCAATGGATGGTGTAGAATGGGACCAGCAGCCAATGAGTTCTACTACACAGAAAATTAGTGTTGTTGGAGATGCCTATGAGGCAACTAAAGATGCTCATGGGATATGCATTCTTACAGAGTGGGATGAGTTCAAGAACATTGATTATCAAAGCGTGTATGACAACATGCACAAACCAGCATTTGTGTTTGATGGTAGAAACATATTGAATGTTGACAAGCTGAGAGAAATTGGATTCATTGTGTACTCAATTGGGAGGCCATTAGAGCAATGGCTAAAGAACATGCCCCAACAGGCTTGA

Predicted protein sequences of Glyma14g14161

Limit To All Plant Sequences

>Glyma14g14161.1   sequence type=predicted peptide   gene model=Glyma14g14161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEERVVILSKNGKEVTLGEIEGDATDEDVSGILVLGVPGGLVADAKCSFSGIDVLTLQEMEFILIQTIEYDQHPQPPGRSIQDCQNVSSVAGNSSNLGTANVIQDYNAYTSYRSSSNPYGYGSMGYSGYYNNYQQQPNHTYSQPVGAYQNTGAPYQPISSFQNTGSYAGSASYSSTYYNSADYQTTGGYHNSSGYGNQATMWNSGSYFSHPTGNNSTDEVSSTLGTNSTNEVPSSSISPEPIATTFLPAYTDHLPSQPVVCSNPVIFTPAPPTLVHSNTKSHTLLVRLDNTHPIYTREKVETSPRYFVSTKVNKADNGAGIGRQMSAISSSSTEPIILRNFRFLSISDICYIGLQSSSRRDYFENTTKNEEENPENCRDDIETISLHSFDFIASAQRQQSKGIIGGVSHMNKFNCSVRTAEAIEKILCHNTNSKGIKYQILSNPEFLSEGTAIQDFLNPDRVLIGGSQCPEGLEAIQKLKAIYAHWVPEDRMITTNLWSAELSKLADNAFLAQRISSINAIKNTKIGPKFLNASVGFGGSCFQKDILNLVYICDSNGLTEVANYWKQVIKVNDYQKSRFVKRVVTSMFNTVSGKKIAILGFAFKKHTSDTRKTPAIDVCKGLLGDNTCLSIYDPCVTEEQIQKDLSMDGVEWDQQPMSSTTQKISVVGDAYEATKDAHGICILTEWDEFKNIDYQSVYDNMHKPAFVFDGRNILNVDKLREIGFIVYSIGRPLEQWLKNMPQQA*

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