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Report for Sequence Feature Glyma14g14113

Feature Type:gene_model
Chromosome:Gm14
Start:13834198
stop:13848737
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g14113
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G15850AT Annotation by Michelle Graham. TAIR10: RNA helicase 1 | chr4:9001426-9004534 FORWARD LENGTH=522 SoyBaseE_val: 2.00E-125ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0006406GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0006626GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion SoyBaseN/AISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008026GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity SoyBaseN/AISS
GO:0017151GO-mf Annotation by Michelle Graham. GO Molecular Function: DEAD/H-box RNA helicase binding SoyBaseN/AISS
KOG0330 KOG ATP-dependent RNA helicase JGI ISS
PTHR24031Panther FAMILY NOT NAMED JGI ISS
PTHR24031:SF18Panther SUBFAMILY NOT NAMED JGI ISS
PF00270PFAM DEAD/DEAH box helicase JGI ISS
PF00271PFAM Helicase conserved C-terminal domain JGI ISS
UniRef100_G7KG11UniRef Annotation by Michelle Graham. Most informative UniRef hit: DEAD-box ATP-dependent RNA helicase n=1 Tax=Medicago truncatula RepID=G7KG11_MEDTR SoyBaseE_val: 4.00E-159ISS
UniRef100_UPI000233BCB8UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BCB8 related cluster n=1 Tax=unknown RepID=UPI000233BCB8 SoyBaseE_val: 0ISS

Expression Patterns of Glyma14g14113
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g14113 not represented in the dataset
Glyma14g14113 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g14113 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.14g114900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma14g14113
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g14113
>Glyma14g14113.1   sequence type=CDS   gene model=Glyma14g14113   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCCACCCTGTCGACATCACTCGCTGTCAAGAACTCCCCGTTTGTAGTGTCACACTTTGGCAAGAAACGGTTGGACCAAGTGACTTTGAGCGAGACCTTTGCATAAACTCGCCCACCGGAAGGGGCAAAACTTTGGCCTATGCTCTTCCCCTTCATTCAAAACTTGTTAAGCGTGTCTTCGACGCCCTTGCATCACTGTTGGGTCTCCGTATTGGCTTGGCTGCTGGTCAATCTTCGCTTCGCCACGAGTTTTCTAGCCTCATTTTTCTACCCAGAGAAGATGACGGTCCAAATCCTGGGTTTTTGTCTTCGTTGTGGTTCCAAAGCAAGGTCAACATATTGGTAGCGACCCTTGGAAGGCTAGTGGACCATGTCAACAAGTTGTCGTTGAAGCATCTTCGTTATCTCGTGGTTGACGAAGCAGATCGATTTCTACATGAGGACTACCAGTCCTGGTTGCCTACTGTGATTAAATTAACTCAGTTTGGGCTGGCAAAGATAGTTTTATTTGCTATGTTAACTCGGGGCCCAGGAAGGCTTGCTCAACTTATTTTGCATTACCTTTTATTCCTGAGTGCTGGGAAAATGTGTTATCGGCTCCCAGAATATTTGGAATGTTACAAACTGATATGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATTTGTGGAATCAACACATCATCTCTGCAAATTGCTAAATTTTTTTGGTGATCTTAAAATTGGTATCAAGGAGTTTTCTGGTCTAAAACATCAACAGGTAAGAAGCAAGACAGTAGGTGAATTTCAGAGAAGGGAGTTTCAAGTTCTTGTATCTTCTGATGCAATGACTCGGGTAATGGATGTTGAAGGGTTAAGAAATGTCATTAATTATGACGTGCCCAAATACACAAAGACGTATGTTCATCGACCTGGTAGAACTGCAAGAGCTGGCCAGACTGGGTGTTGCTTTACATTGATGTCAAAAGATGAGGTCGGAGGATTTGAGAAGTTGATGAAAAAGGCGGAGGCCAGTGATTGTCTTCAGCATACTGTTCCATCCAGTTTGATTGAAGCACTTCATAGTACCTACAGTTCAGATGTTTCATTAAGTCTCTGTCATGTTCCATTGTTGGCAACACTAACAAAATTGAAGGAGAAAATTCTGGAGGCCCGGAGGAAACCAAGGATAAGTCTTGCCAATCGATCAGAGTGA
Predicted protein sequences of Glyma14g14113
>Glyma14g14113.1   sequence type=predicted peptide   gene model=Glyma14g14113   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRHPVDITRCQELPVCSVTLWQETVGPSDFERDLCINSPTGRGKTLAYALPLHSKLVKRVFDALASLLGLRIGLAAGQSSLRHEFSSLIFLPREDDGPNPGFLSSLWFQSKVNILVATLGRLVDHVNKLSLKHLRYLVVDEADRFLHEDYQSWLPTVIKLTQFGLAKIVLFAMLTRGPGRLAQLILHYLLFLSAGKMCYRLPEYLECYKLICERKVKPLYLVALLKSLGEEKCIVFTRFVESTHHLCKLLNFFGDLKIGIKEFSGLKHQQVRSKTVGEFQRREFQVLVSSDAMTRVMDVEGLRNVINYDVPKYTKTYVHRPGRTARAGQTGCCFTLMSKDEVGGFEKLMKKAEASDCLQHTVPSSLIEALHSTYSSDVSLSLCHVPLLATLTKLKEKILEARRKPRISLANRSE*






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