Glyma14g14010 - SoyBase

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Report for Sequence Feature Glyma14g14010

Feature Type:	gene_model
Chromosome:	Gm14
Start:	13751649
stop:	13756626
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g14010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32140	AT	Annotation by Michelle Graham. TAIR10: EamA-like transporter family \| chr4:15523037-15525195 REVERSE LENGTH=394	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2765	KOG	Predicted membrane protein	JGI		ISS
PTHR23051	Panther	SOLUTE CARRIER FAMILY 35, MEMBER F5	JGI		ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_I1M9H2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9H2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O49378	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT4g32140/F10N7_50 n=1 Tax=Arabidopsis thaliana RepID=O49378_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g14010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g14010

Paralog	Evidence	Comments
Glyma17g32170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g14010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g114000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g14010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g14010

Limit To All Plant Sequences

>Glyma14g14010.1   sequence type=CDS   gene model=Glyma14g14010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTGGAGATACAAGGCAGGGTTGTTCCTCATACTTACTGTGGTTGTCATATGGGTCACCTCTGCTGAAGTCACCCAGGATATTTTTATAGATTACAAGCAGCCATTTGCAGTGACGTATCTTGGAGCTTCTCTTATGGTAGTTTACCTCCCAGTAGCATTCATTAAGGACTGGTTGTATAAGTTATTTAAACACTGCTCTTCTAAAAGTGGAAGAAGTGCAAAAGTTGGGGATGATTTTTCTGTCACGTGTACCTCTCCTCTCAAGGGCAATGGAGTGCAAAAAACCACTGAAGTAGAATTAGGGAGCATGACTCGAAAAGATAGTGATGCAAACCTTTCAGTACAAGAACAAGTAAAGCCATTGGTGGCTAAATATAATGATGCTACTGCTATAAAGGCCGAGAAAGAACTTACTACAAGGGAAATTGCTACTTATGGATTTTACATTGCACCTATCTGGTTTATAACTGAGTATCTATCAAATGCTGCCCTTGCACGAACAAGCGTTGCAAGTACAACAGTATTGTCATCTACTTCAGGACTCTTCACTCTCTTCATTGGTGTGTTTTTGGGCCAAGACAATTTAAATGTATCAAAAGTAGTTGCTGTCTTGGTCAGCATGTCTGGGGTTGTGATGACAACTCTGGGGAAAACATGGGCTGCAGATGATGCGCTATCAAGTGCTTCCAATGGACAGCGCTCTCTTGTTGGAGATCTTTTTGGCCTTCTCTCGGCCATGTCATATGGTCTATTTACAGTGCTTCTTAAAAAAATTTCTGGTGAAGGAGGAGAACGGGTTGATGTGCAAAAGCTGTTTGGATATGTTGGATTGTTTACACTTGTAGCACTATGGTGGCTTATCTGGCCATTGTCAGCCTTAGGAATTGAACCAAAGTTTACAATTCCCCATTCAGCTAGAGTGGACGAAGTGGTTCTTGCCAATGGATTTGTTGGTAGTGTTCTCTCAGACTACTTCTGGGCACTTTGTGTTGTATGGACAACCCCCCTAGTGGCCACTTTGGGCATGTCACTCACCATTCCTCTTGCTATGTTGGCTGACATGGTGATCCATGGCCGGCATTATTCGGCGTTGTACATTCTTGGCTCAGTTCAGGTATTTGCAGGCTTTGTGATAGCTAATATTTCAGATAGGCCAACCAAGAGGCTGGGATTATAG

Predicted protein sequences of Glyma14g14010

Limit To All Plant Sequences

>Glyma14g14010.1   sequence type=predicted peptide   gene model=Glyma14g14010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWRYKAGLFLILTVVVIWVTSAEVTQDIFIDYKQPFAVTYLGASLMVVYLPVAFIKDWLYKLFKHCSSKSGRSAKVGDDFSVTCTSPLKGNGVQKTTEVELGSMTRKDSDANLSVQEQVKPLVAKYNDATAIKAEKELTTREIATYGFYIAPIWFITEYLSNAALARTSVASTTVLSSTSGLFTLFIGVFLGQDNLNVSKVVAVLVSMSGVVMTTLGKTWAADDALSSASNGQRSLVGDLFGLLSAMSYGLFTVLLKKISGEGGERVDVQKLFGYVGLFTLVALWWLIWPLSALGIEPKFTIPHSARVDEVVLANGFVGSVLSDYFWALCVVWTTPLVATLGMSLTIPLAMLADMVIHGRHYSALYILGSVQVFAGFVIANISDRPTKRLGL*

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