Glyma14g14000 - SoyBase

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Report for Sequence Feature Glyma14g14000

Feature Type:	gene_model
Chromosome:	Gm14
Start:	13739910
stop:	13746899
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g14000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32120	AT	Annotation by Michelle Graham. TAIR10: Galactosyltransferase family protein \| chr4:15517230-15519687 REVERSE LENGTH=345	SoyBase	E_val: 0	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008378	GO-mf	Annotation by Michelle Graham. GO Molecular Function: galactosyltransferase activity	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
KOG2288	KOG	Galactosyltransferases	JGI		ISS
PTHR11214	Panther	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE	JGI		ISS
PTHR11214:SF6	Panther	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED	JGI		ISS
PF01762	PFAM	Galactosyltransferase	JGI		ISS
UniRef100_B9RP11	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Galactosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RP11_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1M9H0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9H0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g14000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g14000

Paralog	Evidence	Comments
Glyma17g32180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g14000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g113900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g14000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g14000

Limit To All Plant Sequences

>Glyma14g14000.2   sequence type=transcript   gene model=Glyma14g14000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCCAAAGTATAACCACATTACAATATCAGTGACTGTAACATCATTTATATATCAGTTTCACAAAACCATAAAAAAAAAACTTAAATTGAAAACAGAGTCCTTCCTTGTCTGTTATCACTGTGTAAGCAGTGATCGATTCTGCGAACTGCGATTCGCATCGCCAATTCAAAAGCGTTCGTTCGTCGGAGATGGAGACGCTACCGACGACGACGACAAAGCGAGGAGGAGCGAGATCGAAGCCCGTTCAGACCTCGAAATCGTCTCTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGGTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAGAGGCCTAAGGTTCTTACAGTGGAAGATAAGTTAATGGTGCTTGGGTGCAGGGATCTGGAGAGGAGGATTGTGGAAGCTGAGATGGAATTGACATTGGCTAAGAGCCAAGGGTACCTAAAGGGGCAAGGCCAGAGAAGCGGCTCTTCTGATCGTAGGCTTCTTGCTGTTATCGGAGTGTATACTGGATTTGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAGGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTATTGGTCGGAGTGCTAATCGAGGTGATAGCTTAGATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTGAAGGTCATGAGGAAGCTCAAGAAGAGTTGCCTAAAAAAGTTAAAACCTTCTTCAGTACTGCAGTTCAGAACTGGGATGCTGACTTTTATGTAAAAGTTGATGATGGCATTGATATTGATCTCGAGGGTTTAATTGAACTTCTTGACCGTCGTCGTGGTCAGGATGGGGCATATGTTGGATGCATGAAGTCAGGAGAAGTGATATCAGAAGAGGGAAAGCCATGGTATGAACCTGATTGGTGGAAATTTGGGGATGAAAAATCGTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGCACAATACATTAATATAAACAGTGTATCTTTGAAGACATATGCCTATGATGATACATCATTGGGATCATGGATGATGGGCGTCCAAGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAGACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCTACTCTTATGGGAACTCACACAATTTGTCTGAAAATCAGTATCAGTTGAACATTATGTTCACTCTTTTCAGTTGCATACTGCCTTGAGAGCTTTGTAGACAATATCAATATAATTCCTTTCTAGATCCAGTTATCTGTTCATTCTTTTAGATGCTAGCAGCGAAATTGAGGGATAACTACTGATTACGGAGTTCAGCCATTGGTGCTCAATTGCTATTTTCGGGGGTGATATGATTGTAGTTTTACTCTGCTATTGGATATACACAACTTCTGTTGATGACCAAATATTGAAGAGAAAAAAAAAACTATATACTAAATATTGATGTATTGAACCGCTGACGAACTAATTGTAGACTTTGTTGCACTGAAATTTTGCTGCAACTCAATTTATTTATGATGCTTTTGCCTTTCGTATTATTTGTTATGCCATCAAACCTTTGAAAAATCTTACAGCCAAGATTCTGTTCAGCAATAAGTAAAATAAACGAAGAAAAAG

Coding sequences of Glyma14g14000

Limit To All Plant Sequences

>Glyma14g14000.1   sequence type=CDS   gene model=Glyma14g14000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACGCTACCGACGACGACGACAAAGCGAGGAGGAGCGAGATCGAAGCCCGTTCAGACCTCGAAATCGTCTCTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGGTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAGAGGCCTAAGGTTCTTACAGTGGAAGATAAGTTAATGGTGCTTGGGTGCAGGGATCTGGAGAGGAGGATTGTGGAAGCTGAGATGGAATTGACATTGGCTAAGAGCCAAGGGTACCTAAAGGGGCAAGGCCAGAGAAGCGGCTCTTCTGATCGTAGGCTTCTTGCTGTTATCGGAGTGTATACTGGATTTGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAGGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTATTGGTCGGAGTGCTAATCGAGGTGATAGCTTAGATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTGAAGGTCATGAGGAAGCTCAAGAAGAGTTGCCTAAAAAAGTTAAAACCTTCTTCAGTACTGCAGTTCAGAACTGGGATGCTGACTTTTATGTAAAAGTTGATGATGGCATTGATATTGATCTCGAGGGTTTAATTGAACTTCTTGACCGTCGTCGTGGTCAGGATGGGGCATATGTTGGATGCATGAAGTCAGGAGAAGTGATATCAGAAGAGGGAAAGCCATGGTATGAACCTGATTGGTGGAAATTTGGGGATGAAAAATCGTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGCACAATACATTAATATAAACAGTGTATCTTTGAAGACATATGCCTATGATGATACATCATTGGGATCATGGATGATGGGCGTCCAAGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAGGTGAAATCCCAGTTCTTATGTTTTGCAGTGGTTGTTTTCTTGCAGTTATAATGTTCAATATAACTTTTCTCATTACCTGTGCCCATTTTCAGACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCTACTCTTATGGGAACTCACACAATTTGTCTGAAAATCAGTATCAGTTGA

>Glyma14g14000.2   sequence type=CDS   gene model=Glyma14g14000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACGCTACCGACGACGACGACAAAGCGAGGAGGAGCGAGATCGAAGCCCGTTCAGACCTCGAAATCGTCTCTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGGTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAAGAATTCAGCTCAGAGGCCTAAGGTTCTTACAGTGGAAGATAAGTTAATGGTGCTTGGGTGCAGGGATCTGGAGAGGAGGATTGTGGAAGCTGAGATGGAATTGACATTGGCTAAGAGCCAAGGGTACCTAAAGGGGCAAGGCCAGAGAAGCGGCTCTTCTGATCGTAGGCTTCTTGCTGTTATCGGAGTGTATACTGGATTTGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAGGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTATTGGTCGGAGTGCTAATCGAGGTGATAGCTTAGATCGCAATATTGACGAGGAAAATCGCACAACAAAGGATTTCCTGATTCTTGAAGGTCATGAGGAAGCTCAAGAAGAGTTGCCTAAAAAAGTTAAAACCTTCTTCAGTACTGCAGTTCAGAACTGGGATGCTGACTTTTATGTAAAAGTTGATGATGGCATTGATATTGATCTCGAGGGTTTAATTGAACTTCTTGACCGTCGTCGTGGTCAGGATGGGGCATATGTTGGATGCATGAAGTCAGGAGAAGTGATATCAGAAGAGGGAAAGCCATGGTATGAACCTGATTGGTGGAAATTTGGGGATGAAAAATCGTATTTCCGACATGCGGCTGGTTCACTTGTTATAATTTCAAAGAATTTGGCACAATACATTAATATAAACAGTGTATCTTTGAAGACATATGCCTATGATGATACATCATTGGGATCATGGATGATGGGCGTCCAAGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAGACAAGGTATGCTCCTTGGCTTGA

Predicted protein sequences of Glyma14g14000

Limit To All Plant Sequences

>Glyma14g14000.1   sequence type=predicted peptide   gene model=Glyma14g14000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METLPTTTTKRGGARSKPVQTSKSSLVMAFFSCVAWLYVAGRLWQDAENRNLLASLLKKNSAQRPKVLTVEDKLMVLGCRDLERRIVEAEMELTLAKSQGYLKGQGQRSGSSDRRLLAVIGVYTGFGSKLKRNVFRGSWMPRGDALKKLEERGVVIRFVIGRSANRGDSLDRNIDEENRTTKDFLILEGHEEAQEELPKKVKTFFSTAVQNWDADFYVKVDDGIDIDLEGLIELLDRRRGQDGAYVGCMKSGEVISEEGKPWYEPDWWKFGDEKSYFRHAAGSLVIISKNLAQYININSVSLKTYAYDDTSLGSWMMGVQATYIDDSRLCCSSIRQGEIPVLMFCSGCFLAVIMFNITFLITCAHFQTRYAPWLDWRITSTFFPTLMGTHTICLKISIS*

>Glyma14g14000.2   sequence type=predicted peptide   gene model=Glyma14g14000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METLPTTTTKRGGARSKPVQTSKSSLVMAFFSCVAWLYVAGRLWQDAENRNLLASLLKKNSAQRPKVLTVEDKLMVLGCRDLERRIVEAEMELTLAKSQGYLKGQGQRSGSSDRRLLAVIGVYTGFGSKLKRNVFRGSWMPRGDALKKLEERGVVIRFVIGRSANRGDSLDRNIDEENRTTKDFLILEGHEEAQEELPKKVKTFFSTAVQNWDADFYVKVDDGIDIDLEGLIELLDRRRGQDGAYVGCMKSGEVISEEGKPWYEPDWWKFGDEKSYFRHAAGSLVIISKNLAQYININSVSLKTYAYDDTSLGSWMMGVQATYIDDSRLCCSSIRQDKVCSLA*

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