SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G25280 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related (InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins in 474 species: Archae - 213; Bacteria - 366; Metazoa - 159; Fungi - 135; Plants - 54; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink). | chr2:10762639-10764631 REVERSE LENGTH=291 | SoyBase | E_val: 8.00E-175 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3086 | KOG | Predicted dioxygenase | JGI | ISS | |
| PTHR11060 | Panther | UNCHARACTERIZED DUF52 | JGI | ISS | |
| PF01875 | PFAM | Memo-like protein | JGI | ISS | |
| UniRef100_I1M9G9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9G9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SIR5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Arabidopsis thaliana RepID=Q9SIR5_ARATH | SoyBase | E_val: 4.00E-172 | ISS |
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Glyma14g13970 not represented in the dataset |
Glyma14g13970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g113800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g13970.1 sequence type=CDS gene model=Glyma14g13970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCACCAAGGTTAGGAGACCCTCCCATGCTGGCTCTTGGTACACCGACAATCCTAAGCAGCTTTCAGAGGAGCTTGAAGGGTGGTTGCAATCGTGTGGTTTGACCAAATCTTCTGATGTGCGGGGAGTGATAGCACCACATGCTGGTTATTCCTATTCAGGAAGAGCTGCTGCTTATGCCTTCGGAAACATTGATCCATCAAATATTACACGTGTGTTCCTTCTTGGTCCTTCTCACCACTATTACACTCCAAAATGTGCTCTTACGACTGCAACTGTCTACAAGACACCCATAGGGGACCTGCCTATTGATTTGGAAGTAACTGAGGAGCTTAAAGCTACGGGGAAATTTGAGCTGATGGATATTCGTGTTGATGAAGCTGAACATAGCATGGAAATGCACCTGCCATATCTTGCCAAAGTATTTGAAGGGCACCAGGTGAAAATTGTACCCATTTTAGTTGGTGCTGTTAGTGCTGAAAATGAAGCTATGTATGGGCAGATTCTTGCCAAATATGTTGATGATTCCAATAACTTCTTCTCTATTTCATCAGACTTTTGTCACTGGGGATCTCGATTCAATTACATGCACTATGACAAGAAACATGGGCCTATATACAAATCTATTGAGGCCTTAGACAAGATGGGCATGGATATCATAGAAACAGGAGATCCAGATTCATTCAAGCAATATCTGTTGGAGTATGACAATACAATCTGTGGACGCCATCCAATTAGTGTTTTTCTTCATATGCTAAGGAACTGCTCAACAAAGATAAAAATCAAATTTCTTCGCTATGAGCAATCCAGTCAGTGCAAAAGTAACAGGGATAGTAGTGTTAGTTATGCATCTGCAGCAGCAAAAACTGATGATTCAAGCTCCAGTTGA
>Glyma14g13970.1 sequence type=predicted peptide gene model=Glyma14g13970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTKVRRPSHAGSWYTDNPKQLSEELEGWLQSCGLTKSSDVRGVIAPHAGYSYSGRAAAYAFGNIDPSNITRVFLLGPSHHYYTPKCALTTATVYKTPIGDLPIDLEVTEELKATGKFELMDIRVDEAEHSMEMHLPYLAKVFEGHQVKIVPILVGAVSAENEAMYGQILAKYVDDSNNFFSISSDFCHWGSRFNYMHYDKKHGPIYKSIEALDKMGMDIIETGDPDSFKQYLLEYDNTICGRHPISVFLHMLRNCSTKIKIKFLRYEQSSQCKSNRDSSVSYASAAAKTDDSSSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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