Glyma14g13862 - SoyBase

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Report for Sequence Feature Glyma14g13862

Feature Type:	gene_model
Chromosome:	Gm14
Start:	13489114
stop:	13490513
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g13862

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G64110	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:23796887-23801255 REVERSE LENGTH=829	SoyBase	E_val: 7.00E-24	ISS
GO:0048235	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen sperm cell differentiation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
PTHR23074	Panther	AAA ATPASE	JGI		ISS
PTHR23074:SF20	Panther	AAA-FAMILY ATPASE	JGI		ISS
UniRef100_Q9SH62	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F22C12.12 n=1 Tax=Arabidopsis thaliana RepID=Q9SH62_ARATH	SoyBase	E_val: 2.00E-21	ISS
UniRef100_UPI000233E022	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E022 related cluster n=1 Tax=unknown RepID=UPI000233E022	SoyBase	E_val: 1.00E-28	ISS

Expression Patterns of Glyma14g13862

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g13862 not represented in the dataset	Glyma14g13862 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g13862 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g113000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g13862

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g13862

Limit To All Plant Sequences

>Glyma14g13862.2   sequence type=transcript   gene model=Glyma14g13862   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGATTATGGTAGGACTACCATCTATGGAGAACAGGGAAAAGATTTTGAGGAATCTTTTGGCAAAAGAAAAGGTGGACAACGAAGTTGAGTTTAAGGAACTTGCAATTATGACAGAAGGATATACTGGAAGTGATCTAAAGAACTTGTGCACAAATGCTACTTATCGGCCTGCTAGAGAGCTAATTCAGCAAGAGAGGCTAAAGAGTCTGGTAAGTGGCACTTGTATAATTTATTTTGAGTTTAATTGGTATGACTTAAAAAATTATGCTCTTATATTTATTAGATATCTTTCATAGGGGTATTGAAATTTTGAAATCAGATTACTTAACAACATTT

Coding sequences of Glyma14g13862

Limit To All Plant Sequences

>Glyma14g13862.1   sequence type=CDS   gene model=Glyma14g13862   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGAATTAAACGTAGTTGGTTTGTTAGGGCGAGAAACTTATTTAGATGGATTTGCCATGACAAAAATCTTTACTCTCTATACCACTAGTGTTATGGAAAAGATTTTGAGGAATCTTTTGGCAAAAGAAAAGGTGGACAACGAAGTTGAGTTTAAGGAACTTGCAATTATGACAGAAGGATATACTGGAAGTGATCTAAAGAACTTGTGCACAAATGCTACTTATCGGCCTGCTAGAGAGCTAATTCAGCAAGAGAGGCTAAAGAGTCTGGTAAGTGGCACTTGTATAATTTATTTTGAGTTTAATTGGTATGACTTAAAAAATTATGCTCTTATATTTATTAGATATCTTTCATAG

>Glyma14g13862.2   sequence type=CDS   gene model=Glyma14g13862   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGGACTACCATCTATGGAGAACAGGGAAAAGATTTTGAGGAATCTTTTGGCAAAAGAAAAGGTGGACAACGAAGTTGAGTTTAAGGAACTTGCAATTATGACAGAAGGATATACTGGAAGTGATCTAAAGAACTTGTGCACAAATGCTACTTATCGGCCTGCTAGAGAGCTAATTCAGCAAGAGAGGCTAAAGAGTCTGGTAAGTGGCACTTGTATAATTTATTTTGAGTTTAATTGGTATGACTTAAAAAATTATGCTCTTATATTTATTAGATATCTTTCATAG

Predicted protein sequences of Glyma14g13862

Limit To All Plant Sequences

>Glyma14g13862.1   sequence type=predicted peptide   gene model=Glyma14g13862   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLELNVVGLLGRETYLDGFAMTKIFTLYTTSVMEKILRNLLAKEKVDNEVEFKELAIMTEGYTGSDLKNLCTNATYRPARELIQQERLKSLVSGTCIIYFEFNWYDLKNYALIFIRYLS*

>Glyma14g13862.2   sequence type=predicted peptide   gene model=Glyma14g13862   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGLPSMENREKILRNLLAKEKVDNEVEFKELAIMTEGYTGSDLKNLCTNATYRPARELIQQERLKSLVSGTCIIYFEFNWYDLKNYALIFIRYLS*

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