SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G05830 | AT | Annotation by Michelle Graham. TAIR10: trithorax-like protein 2 | chr1:1754452-1761225 FORWARD LENGTH=1083 | SoyBase | E_val: 5.00E-38 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0051568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K4 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0042800 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone methyltransferase activity (H3-K4 specific) | SoyBase | N/A | ISS |
| PTHR22884 | Panther | SET DOMAIN PROTEINS | JGI | ISS | |
| PTHR22884:SF73 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00856 | PFAM | SET domain | JGI | ISS | |
| UniRef100_B9S1P2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mixed-lineage leukemia protein, mll, putative n=1 Tax=Ricinus communis RepID=B9S1P2_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BCAF | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BCAF related cluster n=1 Tax=unknown RepID=UPI000233BCAF | SoyBase | E_val: 0 | ISS |
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Glyma14g13792 not represented in the dataset |
Glyma14g13792 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g32895 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g13792.1 sequence type=CDS gene model=Glyma14g13792 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCAGATTTGAGTAGAGATATGAATAGTTTCAAGGGCGAAAATATTGAGCAAGGTGGGAAGTTAGATGGCCAAGACTCGATCAAAATTGGCTTTCGTACACCTCAATGGAGAGATGTGCCAAGTAAGGTCAGGAAAGCAGTTTGTGATGCAACATCTTTAGGTCAGACAGCTACTGGTATGGATTGGGAAGGACAAGACAGTGTTCAACTTGGAAACATTTCTATGAAACGCTTCAAAAGAACTATTGACATGGGAGATATGTCAAAAGAGCAAGAAAATTCTAATGTTTCTTCTGGATGCTCTGCTCCTGTGGTTACTCAGGCATCTTTGGAGGTCAACAAAATTGAACCCTGCATGGGTGATGCTGTAGACACTGGCTTTGTCAACAACCTTGTAGTTGATGAAGGGTCAGGTATTGATAAAGGCTGGTCGTCAGATTTGGTTGAAAAAAGTGATGAGTTTCTAGGCTCATCCTCTGGGAGTTGCTTGAAAAATGATTATCTGAGAGTCTTAAATGATCAACCATGTTGCAATCTCCTTGATGACCTTAAACTGTTAGATTCCTTGATATGGAAGAAAGGATGGAATCAAAATAATTTTGTGCTTTCTTCTAATTGTAAAAGCAATCAATCTCAAAAAGTCAAGAAGGGCCTTAAAGGAAAAAAGCGAAAGAGAAATTTGGTGAGGATTCTAGATGCTTCATTATCTTCTGAATTCCCTTCCTTATTGCATAAAAAGAATGAAGAAGTTACTGGAATATGTAATTCCTCTTCTAGTTGTTCAAAAGAAATGCAAATGCGCCCTTTATCTAGCCTGCAAAAATCATCTAACAAGTCTTCCTTTGTTCAACCTAGTAACAAACAAAAACATACTGCATTTTCATCCAAATTTCTTTCTTGTAAGAATCATCTGAACAAGCATCAAAGTTACAAAGTTGGCTACGAGTCAGAATCAAGTTCTGATGCTGAGTTTCGCACATTGCCTGGAGTTTCTGGATCAAAGAAATTAAAAAAGGATCTCACTTCTGATTGTTTTGAGCAGTTTCAAATGCAAGAACCAGCCTATGAGGAACCTGAAAATGATAAGCTGAGGCCATTCTCTTGCAGGAAGGAAAATGCTCATAGAATCACAAGGCCAGTAGTATGTGGAAAATATGGTGAAATATCTAGCGGGCATTTGGCTAGAGAGGTGCAAAAACCAGTAAAAATTGTCTCTCTCAGGAAGGTTCTTAAATCTTCCAAAAGATGTACGGGTCATACAAATGGAAAGCCTATACCAACTTCAAAAAAGAAATGGAAGAGATTGAGCATTGGAACAAGTAGTGGACATTGCTGTGGGAACCCTGGTTTAAAAATTAAGGAACACAATGAAACCCAAAATGCAATATTTTTTAATAAAACAAATGTTGATTTGTCCATGGAAGATTTGGATAGAGGTGGCAAGCCACCTGTCGTTTACAAAGGGAAGAGAGATGCCAAAGCTAAGCAGGGTAATAGTGTTGGAAATAGAGCTTATGTTTCATTGAAGGTGAAGAACAAGGAAATTCGGAAACAGCGTAGCATTACTGAACTCACTGCTAAAGAGAGTTATTTTACTGAGAAATGCCTCCTCACGATGGTTTGTAAATGCATGCCAGAAACCAAAGTGATGGATATGATGAATAGTGCTCAAGATCAGGAGCCTGGTTTGTGTAGCACCGCAAGTAGAAACTCCATTCAAGGTCACATGAACATAGCCACCATAAATTCAGATGCTTTCTGCTGTGTGTGTCGAAGCTCAAGCAATGATAAAATCAACTATTTGTTGGAGTGTAGTCGATGTCTGATTAGAGTGCATCAAGCGTGCTATGGTGTTTCCTCATTACCCAAAAAAAGTAGTTGGTGTTGCAGGCCATGCCGAACAAACTCAAAAAATATTGTTTGTGTCCTATGTGGTTATGGAGGTGGAGCCATGACTCGAGCAATAATGAGTCACACAATTGTCAAGAGCCTCCTGAAAGTGTGGAATGGTGAGAAAGATGGCATGCCAAAGAATACAACTTCACATGAAGTTTTTGAAAAGGAAATAGATGCATTTCTATCCTCAAAAGATGGGCAAGAAGTTGATCAAGAAAGTGTACATAACAGTATTACAGAAGCAGTTCTTGATCCAACTGTTAAACAATGGATTCATATGGTTTGTGGTCTTTGGACTCCTGGAACAAGATGCCCCAATGTTGACACCATGAGTGCTTTTGATGTATCTGGTGTTTCGCGTCCAAGAGCAGATGTGGTTTGTTACATTTGCAATCGATGGGGTGGTTCTTGTATAGAGTGCAGGATTGCTGATTGCTCTATCAAGTTTCATCCTTGGTGTGCTCATCAAAAGAACCTCTTGCAAAGTGAGACTGAAGGCATTGATGATGAGAAGATTGGATTTTATGGAAGATGCACGCTTCATATTATTGAACCTAGATGTCTGCCCATATATGATCCTCTTGATGAAATTGGAAGTCAAGAAGAAAAGGAATTCACCTGTGCCAGGGCAGAGGGTTACAAGGGCCGTAGGTGGGATGGTTTTCAGAATAATCAGTGCCAAGGTGGATGCCTTGTTCCTGAGGAGCAGCTAAATGCTTGGATTCACATTAATGGGCAGAAATTATGTTCACGGGGACTTCCAAAATTCCCAGATTTAGATATTGAGCATGATTGTCGAAAGGAATATGCTCGATACAAACAAGCAAAGGGATGGAAACACCTTGTTGTATACAAGTCCCGTATACATGCTCTAGGTCTTTACACTTCTCGATTCATTTCCCGGGGTGAAATGGTTGTTGAGTATATTGGTGAAATTGTGGGGCTGCGTGTGGCTGATAAAAGAGAGAAGGAATATCAATCTGGAAGGAAACTTCAGTACAAGACTGCCTGCTACTTCTTCAGGATAGACAAAGAGCATATTATTGATGCCACAAGGAAAGGGGGGATTGCTCGATTTGTGAACCACTCATGCCTGCCAAATTGCGTGGCAAAAGTGATCACCGTAAGGCATGAAAAGAAGGTTGTCTTCTTGGCAGAGAGGGACATATTTCCTGGTGAAGAGATTACGTATGATTACCACTTTAATCACGAAGACGAAGGAAAGATTCCATGTTACTGCAATTCAAAAAATTGCAGGCGCTATATGAACTAA
>Glyma14g13792.1 sequence type=predicted peptide gene model=Glyma14g13792 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASDLSRDMNSFKGENIEQGGKLDGQDSIKIGFRTPQWRDVPSKVRKAVCDATSLGQTATGMDWEGQDSVQLGNISMKRFKRTIDMGDMSKEQENSNVSSGCSAPVVTQASLEVNKIEPCMGDAVDTGFVNNLVVDEGSGIDKGWSSDLVEKSDEFLGSSSGSCLKNDYLRVLNDQPCCNLLDDLKLLDSLIWKKGWNQNNFVLSSNCKSNQSQKVKKGLKGKKRKRNLVRILDASLSSEFPSLLHKKNEEVTGICNSSSSCSKEMQMRPLSSLQKSSNKSSFVQPSNKQKHTAFSSKFLSCKNHLNKHQSYKVGYESESSSDAEFRTLPGVSGSKKLKKDLTSDCFEQFQMQEPAYEEPENDKLRPFSCRKENAHRITRPVVCGKYGEISSGHLAREVQKPVKIVSLRKVLKSSKRCTGHTNGKPIPTSKKKWKRLSIGTSSGHCCGNPGLKIKEHNETQNAIFFNKTNVDLSMEDLDRGGKPPVVYKGKRDAKAKQGNSVGNRAYVSLKVKNKEIRKQRSITELTAKESYFTEKCLLTMVCKCMPETKVMDMMNSAQDQEPGLCSTASRNSIQGHMNIATINSDAFCCVCRSSSNDKINYLLECSRCLIRVHQACYGVSSLPKKSSWCCRPCRTNSKNIVCVLCGYGGGAMTRAIMSHTIVKSLLKVWNGEKDGMPKNTTSHEVFEKEIDAFLSSKDGQEVDQESVHNSITEAVLDPTVKQWIHMVCGLWTPGTRCPNVDTMSAFDVSGVSRPRADVVCYICNRWGGSCIECRIADCSIKFHPWCAHQKNLLQSETEGIDDEKIGFYGRCTLHIIEPRCLPIYDPLDEIGSQEEKEFTCARAEGYKGRRWDGFQNNQCQGGCLVPEEQLNAWIHINGQKLCSRGLPKFPDLDIEHDCRKEYARYKQAKGWKHLVVYKSRIHALGLYTSRFISRGEMVVEYIGEIVGLRVADKREKEYQSGRKLQYKTACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFLAERDIFPGEEITYDYHFNHEDEGKIPCYCNSKNCRRYMN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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