Glyma14g13470 - SoyBase

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Report for Sequence Feature Glyma14g13470

Feature Type:	gene_model
Chromosome:	Gm14
Start:	12941936
stop:	12943379
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g13470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25190	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr5:8707007-8707655 REVERSE LENGTH=181	SoyBase	E_val: 1.00E-71	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_B9HAT9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HAT9_POPTR	SoyBase	E_val: 2.00E-80	ISS
UniRef100_I1M9F6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9F6_SOYBN	SoyBase	E_val: 1.00E-134	ISS

Expression Patterns of Glyma14g13470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g13470

Paralog	Evidence	Comments
Glyma17g33075	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g13470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g111600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g13470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g13470

Limit To All Plant Sequences

>Glyma14g13470.2   sequence type=transcript   gene model=Glyma14g13470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAACCCACTCAAAAACATTTTTCACAAAACACACTTTCTTGAAAGAAAAAGAATCCATTTTCTTTTCCCCAACATGGCCAGACCTCAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGTTCTTGGGTCTCCGAAATTCGCCACCCTATATTGTTTTGGTGCAGGAAGACTAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCAGCCAGAGCCTATGATGAAGCAGCCAGGCTAATGTGTGGTGCAAGGGCAAGGACAAACTTCCCTTTCAACCCAAATGTGCCACACTCATCATCTTCTAGTTCAAAGCTTCTCTCAGCAACTTTAACTGCAAAACTTCACAGTTGCTACATGGCTTCTTTGCAAATAACAAGACAAGCTTTGGAATGTGAGTCTCAGAGAACACCCTCAGTGCCAAATGCAACCTCCACAACCACACTATTTAGCAACTTCAGTGTGAGGAGTGAGCAAACTCCTGCAGTGTTGCCACACAAGAGACCAGAGGAGGAGCAAGAGTCAGAGGCCAACAGGGGTGGGAAAAGGGTTAAAGCTGTGGAAAATGTTCCTCTACAATTTAAGCCTCTTGAGGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGATCTATTGAGCTCTGCTCTGTCATTCCACCCCAGGCCCTCTAATTGATGCATAGGGAATGAACTCGCATGGTTTTGAGCTGAAGCTAGAGTCACAATTGTATTTGCCTTGCGATTAACAAAATGATGGGTAAAATGTGACTGAAATTGCTGCTGTAGCTGTGAAGGCACAAAAAGAGTGGCCACAATTGCAATTACATAACCCAATTTAAATCGGACAAAATTTAGATGCAGTTTTTTAGGTATTGTTGATATCGTTTTTCGGTCAAAATTAAAGTTTTATCTCGGTGATTGCATTACAAGTCAACATAAATTAATGAGATAAAACTTATGATTAGATAATAACACCAAAATCACCTATAAAACTATAGGTAAGTTTTGTGGTTTAAGAATATACCAATGTCATATCTAAGATATTGCCAGACAAAAACATTTGGGCATTATTGTGGTGGTTCACA

Coding sequences of Glyma14g13470

Limit To All Plant Sequences

>Glyma14g13470.1   sequence type=CDS   gene model=Glyma14g13470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAGACCTCAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGTTCTTGGGTCTCCGAAATTCGCCACCCTATATTGAAGACTAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCAGCCAGAGCCTATGATGAAGCAGCCAGGCTAATGTGTGGTGCAAGGGCAAGGACAAACTTCCCTTTCAACCCAAATGTGCCACACTCATCATCTTCTAGTTCAAAGCTTCTCTCAGCAACTTTAACTGCAAAACTTCACAGTTGCTACATGGCTTCTTTGCAAATAACAAGACAAGCTTTGGAATGTGAGTCTCAGAGAACACCCTCAGTGCCAAATGCAACCTCCACAACCACACTATTTAGCAACTTCAGTGTGAGGAGTGAGCAAACTCCTGCAGTGTTGCCACACAAGAGACCAGAGGAGGAGCAAGAGTCAGAGGCCAACAGGGGTGGGAAAAGGGTTAAAGCTGTGGAAAATGTTCCTCTACAATTTAAGCCTCTTGAGGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGATCTATTGAGCTCTGCTCTGTCATTCCACCCCAGGCCCTCTAA

>Glyma14g13470.2   sequence type=CDS   gene model=Glyma14g13470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAGACCTCAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGTTCTTGGGTCTCCGAAATTCGCCACCCTATATTGTTTTGGTGCAGGAAGACTAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCAGCCAGAGCCTATGATGAAGCAGCCAGGCTAATGTGTGGTGCAAGGGCAAGGACAAACTTCCCTTTCAACCCAAATGTGCCACACTCATCATCTTCTAGTTCAAAGCTTCTCTCAGCAACTTTAACTGCAAAACTTCACAGTTGCTACATGGCTTCTTTGCAAATAACAAGACAAGCTTTGGAATGTGAGTCTCAGAGAACACCCTCAGTGCCAAATGCAACCTCCACAACCACACTATTTAGCAACTTCAGTGTGAGGAGTGAGCAAACTCCTGCAGTGTTGCCACACAAGAGACCAGAGGAGGAGCAAGAGTCAGAGGCCAACAGGGGTGGGAAAAGGGTTAAAGCTGTGGAAAATGTTCCTCTACAATTTAAGCCTCTTGAGGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGATCTATTGAGCTCTGCTCTGTCATTCCACCCCAGGCCCTCTAA

Predicted protein sequences of Glyma14g13470

Limit To All Plant Sequences

>Glyma14g13470.1   sequence type=predicted peptide   gene model=Glyma14g13470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNVPHSSSSSSKLLSATLTAKLHSCYMASLQITRQALECESQRTPSVPNATSTTTLFSNFSVRSEQTPAVLPHKRPEEEQESEANRGGKRVKAVENVPLQFKPLEEDHIEQMIEELLDYGSIELCSVIPPQAL*

>Glyma14g13470.2   sequence type=predicted peptide   gene model=Glyma14g13470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARPQQRYRGVRQRHWGSWVSEIRHPILFWCRKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNVPHSSSSSSKLLSATLTAKLHSCYMASLQITRQALECESQRTPSVPNATSTTTLFSNFSVRSEQTPAVLPHKRPEEEQESEANRGGKRVKAVENVPLQFKPLEEDHIEQMIEELLDYGSIELCSVIPPQAL*

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