SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G25170 | AT | Annotation by Michelle Graham. TAIR10: PPPDE putative thiol peptidase family protein | chr5:8693257-8694438 FORWARD LENGTH=218 | SoyBase | E_val: 4.00E-98 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0324 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12378 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF05903 | PFAM | PPPDE putative peptidase domain | JGI | ISS | |
| UniRef100_I1M9F3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9F3_SOYBN | SoyBase | E_val: 5.00E-159 | ISS |
| UniRef100_O81728 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=O81728_ARATH | SoyBase | E_val: 4.00E-88 | ISS |
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Glyma14g13420 not represented in the dataset |
Glyma14g13420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g33110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g111300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g13420.2 sequence type=transcript gene model=Glyma14g13420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCAAATACTACTGTAGTAGTATTAAAATCTTTACTCGTGATGATTAGCTTTCCTTCCCGAAACAATAAATAATGCAGCACCAAGAAAAAATGAATAAAAGCTAAGGCAGGGAGAAAGGCATAGCACACTGCAAGATTCTCTTCTTCTCCGTGTTCCGAAAGCGAAGGAGCAATCATATAATGAGAAGAAGAAGAAGAAACAAGAAGAGGCAAGAACAAATTAGGATCACCAACAACAAAATCAGAGAAAATTTCAATGGCCATTCTCTTTTCTCTCTTCCCATTTTGCCCTTGAGTTCTTTCTAGATTTTCCCCATTTCCCTCCTCACATATCACACACACATAGCCCAAAGGCCACAACCTGCGAAACCAAAAAAGAAAAAGAAAACAACAACAACATCGTATTCTATTCCATAATGTTGTGTAAACTGGTTCCGCGCAAGAAAAAACCCGGTTCGAACCCGGTTTACCTTAACGTCTACGACCTAACCCCAATTAACGGTTACGCTTATTGGCTTGGCCTCGGAGTTTACCATTCTGGCGTTCAAGTTCATGGGGTTGAATATGGATTTGGAGCACATGAACGCGACACGACTGGGATTTTTGAAGTGGAGCCGGGACACTGCCCTGGATTCACCTTCAGGAAATCGATTTTCATTGGATCGACGGACATGGGACCGAAGGATGTTCGTGTGTTCATGGAGAGGCTGGCTGATGAGTATTCTGGGAACACCTACCACCTTATCCAGAAAAACTGCAACCACTTCTGCGAAGATCTTTGTTTCAGATTAACGGGAAAGTCTATTCCTCGATGGGTGAATCGGCTTGCTAGACTTGGTTTTCTTTGCAACTGTGTTCTTCCACCCAGCCTAAATGAAACAAAGGTTCGCCAAGTTACATTAGACAGGGTTCAAGAGGGAGGAGAAAAGAAGAAAATGAGAAGCCAGTCGAGCAGGTGTCCCATAGGAGTTTGGGGTGTCCATTAATTTTTTTTTTAAAATGTATCTTTTTTCAATGTGGTCACATCTTTCTACTCAACATAATTCGATCCTGATGGATATTATCGCGATCAGTCCTCATTCCTCCCTCTAACCAGTAATCCCCTCATTTGGGTGTTGTCTCCTCTCTCCAACTATTGAGTACTTTGCTTATTTTTTTATTGATGGACTTAAGATGAAATTCAA
>Glyma14g13420.1 sequence type=CDS gene model=Glyma14g13420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTGTAAACTGGTTCCGCGCAAGAAAAAACCCGGTTCGAACCCGGTTTACCTTAACGTCTACGACCTAACCCCAATTAACGGTTACGCTTATTGGCTTGGCCTCGGAGTTTACCATTCTGGCGTTCAAGTTCATGGGGTTGAATATGGATTTGGAGCACATGAACGCGACACGACTGGGATTTTTGAAGTGGAGCCGGGACACTGCCCTGGATTCACCTTCAGGAAATCGATTTTCATTGGATCGACGGACATGGGACCGAAGGATGTTCGTGTGTTCATGGAGAGGCTGGCTGATGAGTATTCTGGGAACACCTACCACCTTATCCAGAAAAACTGCAACCACTTCTGCGAAGATCTTTGTTTCAGATTAACGGGAAAGTCTATTCCTCGATGGGTGAATCGGCTTGCTAGACTTGGTTTTCTTTGCAACTGTGTTCTTCCACCCAGCCTAAATGAAACAAAGGTTCGCCAAGTTACATTAGACAGGGTTCAAGAGGGAGGAGAAAAGAAGAAAATGAGAAGCCAGTCGAGCAGGTATGAGGCTTCACCCAATCCTGCATTGTCTAGTAGCCAAAGACATTGCCTTCCTCCATCTTCTTCTGTAATTAATGCCTCTCCATCCTCAACCTTAACCGTAAAGTAA >Glyma14g13420.2 sequence type=CDS gene model=Glyma14g13420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTGTAAACTGGTTCCGCGCAAGAAAAAACCCGGTTCGAACCCGGTTTACCTTAACGTCTACGACCTAACCCCAATTAACGGTTACGCTTATTGGCTTGGCCTCGGAGTTTACCATTCTGGCGTTCAAGTTCATGGGGTTGAATATGGATTTGGAGCACATGAACGCGACACGACTGGGATTTTTGAAGTGGAGCCGGGACACTGCCCTGGATTCACCTTCAGGAAATCGATTTTCATTGGATCGACGGACATGGGACCGAAGGATGTTCGTGTGTTCATGGAGAGGCTGGCTGATGAGTATTCTGGGAACACCTACCACCTTATCCAGAAAAACTGCAACCACTTCTGCGAAGATCTTTGTTTCAGATTAACGGGAAAGTCTATTCCTCGATGGGTGAATCGGCTTGCTAGACTTGGTTTTCTTTGCAACTGTGTTCTTCCACCCAGCCTAAATGAAACAAAGGTTCGCCAAGTTACATTAGACAGGGTTCAAGAGGGAGGAGAAAAGAAGAAAATGAGAAGCCAGTCGAGCAGGTGTCCCATAGGAGTTTGGGGTGTCCATTAA
>Glyma14g13420.1 sequence type=predicted peptide gene model=Glyma14g13420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLCKLVPRKKKPGSNPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHERDTTGIFEVEPGHCPGFTFRKSIFIGSTDMGPKDVRVFMERLADEYSGNTYHLIQKNCNHFCEDLCFRLTGKSIPRWVNRLARLGFLCNCVLPPSLNETKVRQVTLDRVQEGGEKKKMRSQSSRYEASPNPALSSSQRHCLPPSSSVINASPSSTLTVK* >Glyma14g13420.2 sequence type=predicted peptide gene model=Glyma14g13420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLCKLVPRKKKPGSNPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHERDTTGIFEVEPGHCPGFTFRKSIFIGSTDMGPKDVRVFMERLADEYSGNTYHLIQKNCNHFCEDLCFRLTGKSIPRWVNRLARLGFLCNCVLPPSLNETKVRQVTLDRVQEGGEKKKMRSQSSRCPIGVWGVH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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