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Report for Sequence Feature Glyma14g13090

Feature Type:gene_model
Chromosome:Gm14
Start:12217190
stop:12217739
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma14g13090
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54790AT Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr3:20281830-20284255 REVERSE LENGTH=724 SoyBaseE_val: 6.00E-23ISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0000151GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex SoyBaseN/AISS
GO:0005871GO-cc Annotation by Michelle Graham. GO Cellular Compartment: kinesin complex SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0019894GO-mf Annotation by Michelle Graham. GO Molecular Function: kinesin binding SoyBaseN/AISS
PTHR23315Panther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING JGI ISS
PTHR23315:SF43Panther ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / U-B JGI ISS
PF04564PFAM U-box domain JGI ISS
UniRef100_B9T1B5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9T1B5_RICCO SoyBaseE_val: 9.00E-21ISS
UniRef100_UPI000233EEACUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EEAC related cluster n=1 Tax=unknown RepID=UPI000233EEAC SoyBaseE_val: 1.00E-27ISS

Expression Patterns of Glyma14g13090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g13090 not represented in the dataset
Glyma14g13090 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g13090 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma14g13090
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma14g13090
>Glyma14g13090.1   sequence type=CDS   gene model=Glyma14g13090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGTGTCCTGTAGTCAAGAATGGTATGACAATCCCTCCATACTTCCGCTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTCATTAGGCAATCCATCCAAAAGTGGCTTGATCATGGGTTGAATGTTTGTCCAAAAACTCATCAGAGACTTACTCTTACAAATGTCATTCCTAATTACACTGTCAAATCTCATTTTTGTAGACTTCATATTGTCCCATTGCCGTTGCAGAACCTTTGTGTGACTTGTGAAATAAATTAT
Predicted protein sequences of Glyma14g13090
>Glyma14g13090.1   sequence type=predicted peptide   gene model=Glyma14g13090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAECPVVKNGMTIPPYFRCPLSLELMLDPVIRQSIQKWLDHGLNVCPKTHQRLTLTNVIPNYTVKSHFCRLHIVPLPLQNLCVTCEINY






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