Glyma14g13070 - SoyBase

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Report for Sequence Feature Glyma14g13070

Feature Type:	gene_model
Chromosome:	Gm14
Start:	12163422
stop:	12169589
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g13070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25050	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr5:8632022-8633828 FORWARD LENGTH=499	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
PTHR24003	Panther	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PR	JGI		ISS
PTHR24003:SF331	Panther		JGI		ISS
PF03092	PFAM	BT1 family	JGI		ISS
UniRef100_B9RNU1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transporter, putative n=1 Tax=Ricinus communis RepID=B9RNU1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1M9E1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M9E1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g13070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g13070

Paralog	Evidence	Comments
Glyma17g33360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g13070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g108700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g13070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g13070

Limit To All Plant Sequences

>Glyma14g13070.1   sequence type=CDS   gene model=Glyma14g13070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGAAAATCAGGAAGATCCATGTAGTGAATCTATGGAGGAAGATGAATCCAAAAGGGGGGTTTGGGACTGTTTTTGCATCCCAATAAATTGGTTTAGCATGCTTTCTAGGGAAATGCATTGGAGCTTTGTGTTTGGGGTGGTGGTTGTTTATGGAATAAGCCAGGGACTTGGTGGAGCTCTTGCTGAAGTTGGGACTAAGTATTACATGAAAGATGTTCAGAAGGTGCAGCCATCTGAGGCACAGATTTATAAAGGAATCACATCCATTCCTTGGATTGTGAAGCCTCTTTGGGGTCTTCTCACTGATGTTCTCCCATTTTTCGGGTATCGCAGGAGACCTTACTTCATTTTTGCTGGTTTCATAGGAGTGATTGCCATGCTTTTGTTATCTTTGCATGAAAACCTGCATCTTGTGTTGGCCCTTTTGGCATTAACAGCTGGGAGTGCTGGGGGGGCAATAGCAGATGTGACCATTGATGCCTGTGTGGCACAGAACAGTATCTCTCAACCCTCACTTGCTGCTGACATGCAAAGTTTATGTGCCTTCAGTTTATCTGTTGGATCACTAATTGGTTACTTCATTAGTGGTATCTTTGTTCACTTTCTAGGCCCTATGGGGGTGTTTGGTCTGATGACTATCCCAGCTGGACTTGTAATTTCGGTTGGTTTTCTGCTTTATGAGCCTCGTATGCACAACACATCTTACACACAGGTGAAACAAAATTTTATTGATGCTGGCAAGGCTATGTGGACTACATTGAGGAGTGAAGATGTATGGGGGCCTTGTTTATACATGTATTTATCCCTTGCATTGAGTTTGGATATTCGTGAAGGAATGTTTTATTGGTATACAGACTCAAAGGGTGGACCATCTTTCTCTCAGGAGAGTGTTGGTTTTATATTTTCAATTAGTTCTGTGGGGGCTCTTTTAGGTGCAATACTATACCAGTATGCTCTAAAGGATTATGCATTCAGGAACTTGCTATTCTGGACTCAGTTGATTTATGGCTTGTCAGGGATGCTTGATCTGATTCTGGTCTCGAGATTGAACCTTAAGTTTGGCATACCAGATTATTTCTTTGTTGTGATTGTTGAAAGCATAGCTAAAATGACTAATAGGCTCAAGTGGATGCCTATGCTTGTGCTTAGCTCAAAGCTTTGTCCCTCAGGTATTGAAGGCACTTTTTTTGCTCTCCTAATGTCAATTGATAATGTTGGACTTCTCTCAGCATCATGGGGTGGTGGCTTTGTTCTCCACATGCTCAGGATCACAAGAACAAAGTTTGATAACATTTGGTTGGCGATTTTGATCCGCAACATTTTAAGGATTGCTCCACTTTGGCTCCTGTTTTTGGTGCCTAGAGCTGACCGCAGCTCTTCAATTCTTCCATGTAAAAGCATGAATTCAGAGGTGGCTATCGACCCTTCAGACACCAAAAATGTTGAATTGGTGTCCCTTGTACACAGTGTTGATGGTAAATAG

Predicted protein sequences of Glyma14g13070

Limit To All Plant Sequences

>Glyma14g13070.1   sequence type=predicted peptide   gene model=Glyma14g13070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEENQEDPCSESMEEDESKRGVWDCFCIPINWFSMLSREMHWSFVFGVVVVYGISQGLGGALAEVGTKYYMKDVQKVQPSEAQIYKGITSIPWIVKPLWGLLTDVLPFFGYRRRPYFIFAGFIGVIAMLLLSLHENLHLVLALLALTAGSAGGAIADVTIDACVAQNSISQPSLAADMQSLCAFSLSVGSLIGYFISGIFVHFLGPMGVFGLMTIPAGLVISVGFLLYEPRMHNTSYTQVKQNFIDAGKAMWTTLRSEDVWGPCLYMYLSLALSLDIREGMFYWYTDSKGGPSFSQESVGFIFSISSVGALLGAILYQYALKDYAFRNLLFWTQLIYGLSGMLDLILVSRLNLKFGIPDYFFVVIVESIAKMTNRLKWMPMLVLSSKLCPSGIEGTFFALLMSIDNVGLLSASWGGGFVLHMLRITRTKFDNIWLAILIRNILRIAPLWLLFLVPRADRSSSILPCKSMNSEVAIDPSDTKNVELVSLVHSVDGK*

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