SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26280 | AT | Annotation by Michelle Graham. TAIR10: CTC-interacting domain 7 | chr2:11188143-11190579 REVERSE LENGTH=567 | SoyBase | E_val: 0 | ISS |
| GO:0006298 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mismatch repair | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003684 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| PTHR13308 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF01713 | PFAM | Smr domain | JGI | ISS | |
| PF08590 | PFAM | Domain of unknown function (DUF1771) | JGI | ISS | |
| UniRef100_B9RQZ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RQZ0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M9C0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9C0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma14g12570 not represented in the dataset |
Glyma14g12570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g33510 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g106500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g12570.2 sequence type=transcript gene model=Glyma14g12570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGTTTTTTCCTTCTCCAATCCCAACATGGATACTAATTAATTAATTACCAACAGTGTATATAGTTAAGCGGGTTTTCTAGAGAGAGAAAGTTTGTAGAGATAGGTAGGCGTCAAATCGAGCGGCGAAAGGTTTGGTGTCTTCTTTAGTACTAATTTTTGTGGTGCTGGTGCTGGTTTTAGCTAAGAGCCTTTCAAAAAAAAAAAAAATACTCCGAAAGAAGAGAGAGAAAGAGAAAAGAGAAAAGGGAAACAAAAGAAAAGAGAGAGAGAACAAAGGAAAAAAAAGAAAACTGATAACTGAGATAACAATACTGTAGATATAGAGAGATAGTTCCAAGCTCCAATTCCCAGAAAAAAATTAAAACTTTGCTTCTTCACTTTTTCTCTTACCCCTTCTGATCTCATGCAATTTCCCCTCATGGATCCCTTTGATTTGATTCGCAAAGGGTTTGGCTGAAGCTATCTGGAATATTTCTGTTACAGTTTTTAAGGTCTATCTATGTTTTAGTCATTTTTGTCCATATTCTTGTCAATAATGAGCTTATCCAAGAAAGGTTCCCAAACAGACGCAAAATTGAGCTCCTTAAACAAAGCAACCTATTTGAATCCAAATGCAGCAGAGTTTGTTCCATTTGCCCTCAGATCATCGCCATCTGGAAGCACCAGCTTGGTAGATGCAACAGCGAGGTTTGCTGCTGCCGGATCTCTTGGGAAAGCAGTTTTAGATCGAGCAGAATCATCCATTTCAAATAATTCCGATGATGAGGCTCACCAGTACTGGCGTTGTCAGCTTCCTGATGATATCACCCCTGACTTCAAGGTCATGGGAGAGGATGAATCCCAAGGTCTTAACAACCTCTCTTTAGCAGGCTTATCTATAAATGATGATAATGAATCCTCAATGTTTCCTTCTTCCAAGGGATTTAGATATATACTAAATGAGCAGCAGGAACTGTCTCAACAGCACCTTAATGGCAATACTTTTGCTGATAAATTAAGGTTTTCCAATTCAACCTACAGGGATGAGCCATCTTCAGCAAGCATTTTGAACTCATCAGCAAAGCCTTGGGATAGGCAAATCAGGAATACTGATTTGCATGTTAGCAGTGGTCAAGAGGCACTTGTTTATGATGACAACACTGGACATGGATTCTTTAATGATGTTTTCGCTGGGAATTCTCTTGTGAATGATACTGATTTGAACCCTTTGGAGTTTTTAGCTTCTCTATTCCCTGGTTTTGCTTCAGAAAGCCTTTCTGAAGTTTTCTTTGCCAATGGATGCGATTTACATCTGACAATTGAGATGCTCACTCAGTTAGAGATTCAAGTTGACAGTAGCTTCAATCAGAATCCGAGTCCAAAGACTCTGTCATCTCCGAATCTGAGTGCAATGGACTTTCCAGCTCTTACTTCATCAAATGGCCAGAATGCTTCAAAATATGCTGCAGATAACGTTCAACAAAGTGGCAATCCTTACTTATCATCTGATAAAGACATGCTCATGTTCAAATCTGGGTCTTCTATTCCATCTAGAGGTGCTGTTGACTTTGCTTCAGCTGTCAGGAAATTGGCTTCTCAGGATTCTGGTATATGGAAGTATGATAAAAATGGTTCTGGTGATGCTTCCACTGGCTCTAGTAGGAGTTTAAATGCTCTGGCTAGTGCCTACAATGGTGGACAGGGGAGAGTCAACAATGGTGATAGATTACAGAATCGTGGCTCTGCTCGGGCAGCTCCTGTTTGGCTTGAAACTGGTGACGCAGTTGCAAATATGTATTCTGAGCTGCGGGAGGAGGCTCGTGATCATGCACGTTTGCGTAATGCATATTTTGAGCAGGTGGGTCTTTGTTTCATGCAGTGATGGAGGAGTTAATGGAAATTTGAATGAGAATACAATGTAATGATTTGGTTAGAACCTACACACATCATGGTTGGCTCGTATCCATATGCTTTACCTTCAATTCTAGTCTTCTATGTTCTTTTTAGTAGTTAGTCCATAATTTTATGTTATTTCTTTTGTTTTCTAGTATATAAATTTGGACAATCAAGTTGGATCTGGGTAGTGTGGGTAAATTTAAAGGAAGAGCTGTTAGGATGATACCAAATTGAATATGCACAAACAACAAATTCAAGGAACATTTGCTGTGTGACCGGCAAGATCCTTCCAGAACCATCTGTTCATAAGTTTTTTTTTATGCAACATTAAATTTTTGCTTTCATTGTAAATTTGTAATGGAATTTGTCCAGCTAACAAACTTTGTAACTTGAGTTTCAACAACTGCGCTTTCTACCTGTAGCTGGGCAAGAGATGTAAGTCCACCCATCCTAATTTTTGTAGCTTGAGTTTAATTATTCATAATATAATAAACAGGCACGGCAAGCCTACCTTGTTGGCAACAAGGCCCTTGCAAAGGAGCTAAGTGTTAAGGGGCAACTGCACAACGTGCATATGAAAGCAGCACATGGAAAAGCTCAAGAATCTATTTATCGCCAGAGGAATCCTGTTGCTCCAGAGAATGGAAGAGGGCCCCAAAGAATGATAGACCTACATGGTCTGCACGTAAGTGAAGCGATTCACGTGCTGAAACACGAACTGAGTGTGCTACGAAGCACAGCCAGAGCCCCCGAGCAGCGTTTGCAGGTTTACATCTGTGTTGGCACTGGTCACCATACTCGGGGCTCCCGCACTCCTGCGAGACTCCCAATAGCTGTACAGCGTTATCTTCTCGAAGAAGGCCTTGATTTCACTGAACCGCAGCCGGGCCTGCTTTGTGTTGTGATATACTGAACCAAGGAGATATACAAGTTTCTGACACGGTAAAAAAATTCATCATGAACACATAGACATTGTAGTCATTCTTGTATCTGTATATGGGAAGTAATGGCAATGGTCAAGTCAAAAAGAAAAATGAAAAAAAAGAGGTTTTACGGGTTGAGAAAAAAGAGGTTTTACGGGTTGAAAAAAAATGGAAAAGGTTAGAAGTAAAGAGAAGGGTTGTAGCAGAATTGTACCATTAAGGTTTCAGAGGCATCTGAACACATTAGTCAGTCAGCAGGAACTCCACTTCAGCATTTACCTTCTGTTAATTTTGTATCCTAATTTTCATTTCTTTGTTAAATTCCTTTTTTTTTAAATTCAGATGTAACTGATAGAACTCAATTACATGATAGAACAATTCACTTTGCCAATTAGATTCAATGCCAATTTACAGCTCGGAACAAATGTTCAACTGGTCTGGTTTTTCATTTCATCCTTTTGGTGCTTACAATTACTATAAGATTTGGAGATCGGTTGATATACTGAATGAAG
>Glyma14g12570.1 sequence type=CDS gene model=Glyma14g12570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCTTATCCAAGAAAGGTTCCCAAACAGACGCAAAATTGAGCTCCTTAAACAAAGCAACCTATTTGAATCCAAATGCAGCAGAGTTTGTTCCATTTGCCCTCAGATCATCGCCATCTGGAAGCACCAGCTTGGTAGATGCAACAGCGAGGTTTGCTGCTGCCGGATCTCTTGGGAAAGCAGTTTTAGATCGAGCAGAATCATCCATTTCAAATAATTCCGATGATGAGGCTCACCAGTACTGGCGTTGTCAGCTTCCTGATGATATCACCCCTGACTTCAAGGTCATGGGAGAGGATGAATCCCAAGGTCTTAACAACCTCTCTTTAGCAGGCTTATCTATAAATGATGATAATGAATCCTCAATGTTTCCTTCTTCCAAGGGATTTAGATATATACTAAATGAGCAGCAGGAACTGTCTCAACAGCACCTTAATGGCAATACTTTTGCTGATAAATTAAGGTTTTCCAATTCAACCTACAGGGATGAGCCATCTTCAGCAAGCATTTTGAACTCATCAGCAAAGCCTTGGGATAGGCAAATCAGGAATACTGATTTGCATGTTAGCAGTGGTCAAGAGGCACTTGTTTATGATGACAACACTGGACATGGATTCTTTAATGATGTTTTCGCTGGGAATTCTCTTGTGAATGATACTGATTTGAACCCTTTGGAGTTTTTAGCTTCTCTATTCCCTGGTTTTGCTTCAGAAAGCCTTTCTGAAGTTTTCTTTGCCAATGGATGCGATTTACATCTGACAATTGAGATGCTCACTCAGTTAGAGATTCAAGTTGACAGTAGCTTCAATCAGAATCCGAGTCCAAAGACTCTGTCATCTCCGAATCTGAGTGCAATGGACTTTCCAGCTCTTACTTCATCAAATGGCCAGAATGCTTCAAAATATGCTGCAGATAACGTTCAACAAAGTGGCAATCCTTACTTATCATCTGATAAAGACATGCTCATGTTCAAATCTGGGTCTTCTATTCCATCTAGAGGTGCTGTTGACTTTGCTTCAGCTGTCAGGAAATTGGCTTCTCAGGATTCTGGTATATGGAAGTATGATAAAAATGGTTCTGGTGATGCTTCCACTGGCTCTAGTAGGAGTTTAAATGCTCTGGCTAGTGCCTACAATGGTGGACAGGGGAGAGTCAACAATGGTGATAGATTACAGAATCGTGGCTCTGCTCGGGCAGCTCCTGTTTGGCTTGAAACTGGTGACGCAGTTGCAAATATGTATTCTGAGCTGCGGGAGGAGGCTCGTGATCATGCACGTTTGCGTAATGCATATTTTGAGCAGGCACGGCAAGCCTACCTTGTTGGCAACAAGGCCCTTGCAAAGGAGCTAAGTGTTAAGGGGCAACTGCACAACGTGCATATGAAAGCAGCACATGGAAAAGCTCAAGAATCTATTTATCGCCAGAGGAATCCTGTTGCTCCAGAGAATGGAAGAGGGCCCCAAAGAATGATAGACCTACATGGTCTGCACGTAAGTGAAGCGATTCACGTGCTGAAACACGAACTGAGTGTGCTACGAAGCACAGCCAGAGCCCCCGAGCAGCGTTTGCAGGTTTACATCTGTGTTGGCACTGGTCACCATACTCGGGGCTCCCGCACTCCTGCGAGACTCCCAATAGCTGTACAGCGTTATCTTCTCGAAGAAGGCCTTGATTTCACTGAACCGCAGCCGGGCCTGCTTTGTGTTGTGATATACTGA >Glyma14g12570.2 sequence type=CDS gene model=Glyma14g12570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCTTATCCAAGAAAGGTTCCCAAACAGACGCAAAATTGAGCTCCTTAAACAAAGCAACCTATTTGAATCCAAATGCAGCAGAGTTTGTTCCATTTGCCCTCAGATCATCGCCATCTGGAAGCACCAGCTTGGTAGATGCAACAGCGAGGTTTGCTGCTGCCGGATCTCTTGGGAAAGCAGTTTTAGATCGAGCAGAATCATCCATTTCAAATAATTCCGATGATGAGGCTCACCAGTACTGGCGTTGTCAGCTTCCTGATGATATCACCCCTGACTTCAAGGTCATGGGAGAGGATGAATCCCAAGGTCTTAACAACCTCTCTTTAGCAGGCTTATCTATAAATGATGATAATGAATCCTCAATGTTTCCTTCTTCCAAGGGATTTAGATATATACTAAATGAGCAGCAGGAACTGTCTCAACAGCACCTTAATGGCAATACTTTTGCTGATAAATTAAGGTTTTCCAATTCAACCTACAGGGATGAGCCATCTTCAGCAAGCATTTTGAACTCATCAGCAAAGCCTTGGGATAGGCAAATCAGGAATACTGATTTGCATGTTAGCAGTGGTCAAGAGGCACTTGTTTATGATGACAACACTGGACATGGATTCTTTAATGATGTTTTCGCTGGGAATTCTCTTGTGAATGATACTGATTTGAACCCTTTGGAGTTTTTAGCTTCTCTATTCCCTGGTTTTGCTTCAGAAAGCCTTTCTGAAGTTTTCTTTGCCAATGGATGCGATTTACATCTGACAATTGAGATGCTCACTCAGTTAGAGATTCAAGTTGACAGTAGCTTCAATCAGAATCCGAGTCCAAAGACTCTGTCATCTCCGAATCTGAGTGCAATGGACTTTCCAGCTCTTACTTCATCAAATGGCCAGAATGCTTCAAAATATGCTGCAGATAACGTTCAACAAAGTGGCAATCCTTACTTATCATCTGATAAAGACATGCTCATGTTCAAATCTGGGTCTTCTATTCCATCTAGAGGTGCTGTTGACTTTGCTTCAGCTGTCAGGAAATTGGCTTCTCAGGATTCTGGTATATGGAAGTATGATAAAAATGGTTCTGGTGATGCTTCCACTGGCTCTAGTAGGAGTTTAAATGCTCTGGCTAGTGCCTACAATGGTGGACAGGGGAGAGTCAACAATGGTGATAGATTACAGAATCGTGGCTCTGCTCGGGCAGCTCCTGTTTGGCTTGAAACTGGTGACGCAGTTGCAAATATGTATTCTGAGCTGCGGGAGGAGGCTCGTGATCATGCACGTTTGCGTAATGCATATTTTGAGCAGGTGGGTCTTTGTTTCATGCAGTGA
>Glyma14g12570.1 sequence type=predicted peptide gene model=Glyma14g12570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLSKKGSQTDAKLSSLNKATYLNPNAAEFVPFALRSSPSGSTSLVDATARFAAAGSLGKAVLDRAESSISNNSDDEAHQYWRCQLPDDITPDFKVMGEDESQGLNNLSLAGLSINDDNESSMFPSSKGFRYILNEQQELSQQHLNGNTFADKLRFSNSTYRDEPSSASILNSSAKPWDRQIRNTDLHVSSGQEALVYDDNTGHGFFNDVFAGNSLVNDTDLNPLEFLASLFPGFASESLSEVFFANGCDLHLTIEMLTQLEIQVDSSFNQNPSPKTLSSPNLSAMDFPALTSSNGQNASKYAADNVQQSGNPYLSSDKDMLMFKSGSSIPSRGAVDFASAVRKLASQDSGIWKYDKNGSGDASTGSSRSLNALASAYNGGQGRVNNGDRLQNRGSARAAPVWLETGDAVANMYSELREEARDHARLRNAYFEQARQAYLVGNKALAKELSVKGQLHNVHMKAAHGKAQESIYRQRNPVAPENGRGPQRMIDLHGLHVSEAIHVLKHELSVLRSTARAPEQRLQVYICVGTGHHTRGSRTPARLPIAVQRYLLEEGLDFTEPQPGLLCVVIY* >Glyma14g12570.2 sequence type=predicted peptide gene model=Glyma14g12570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLSKKGSQTDAKLSSLNKATYLNPNAAEFVPFALRSSPSGSTSLVDATARFAAAGSLGKAVLDRAESSISNNSDDEAHQYWRCQLPDDITPDFKVMGEDESQGLNNLSLAGLSINDDNESSMFPSSKGFRYILNEQQELSQQHLNGNTFADKLRFSNSTYRDEPSSASILNSSAKPWDRQIRNTDLHVSSGQEALVYDDNTGHGFFNDVFAGNSLVNDTDLNPLEFLASLFPGFASESLSEVFFANGCDLHLTIEMLTQLEIQVDSSFNQNPSPKTLSSPNLSAMDFPALTSSNGQNASKYAADNVQQSGNPYLSSDKDMLMFKSGSSIPSRGAVDFASAVRKLASQDSGIWKYDKNGSGDASTGSSRSLNALASAYNGGQGRVNNGDRLQNRGSARAAPVWLETGDAVANMYSELREEARDHARLRNAYFEQVGLCFMQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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