Glyma14g12470 - SoyBase

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Report for Sequence Feature Glyma14g12470

Feature Type:	gene_model
Chromosome:	Gm14
Start:	11248308
stop:	11251712
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g12470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G26570	AT	Annotation by Michelle Graham. TAIR10: catalytics;carbohydrate kinases;phosphoglucan, water dikinases \| chr5:9261580-9266463 FORWARD LENGTH=865	SoyBase	E_val: 5.00E-48	ISS
GO:0000272	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process	SoyBase	N/A	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0005983	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch catabolic process	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0016310	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorylation	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0019200	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate kinase activity	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
GO:0051752	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoglucan, water dikinase activity	SoyBase	N/A	ISS
GO:2001070	GO-mf	Annotation by Michelle Graham. GO Molecular Function: starch binding	SoyBase	N/A	ISS
PTHR22931	Panther	PHOSPHOENOLPYRUVATE DIKINASE-RELATED	JGI		ISS
PTHR22931:SF2	Panther	CHLOROPLAST ALPHA-GLUCAN WATER DIKINASE	JGI		ISS
UniRef100_B9RXZ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast alpha-glucan water dikinase, putative n=1 Tax=Ricinus communis RepID=B9RXZ3_RICCO	SoyBase	E_val: 8.00E-47	ISS
UniRef100_I1LFL5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFL5_SOYBN	SoyBase	E_val: 5.00E-59	ISS

Expression Patterns of Glyma14g12470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma14g12470 not represented in the dataset	Glyma14g12470 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g12470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma14g12470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g12470

Limit To All Plant Sequences

>Glyma14g12470.1   sequence type=CDS   gene model=Glyma14g12470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTTTCTCACTGTAAGCTCCTCCTCTCGTCTTTCTTTTTATTTCATCTACTTTTTTCTTTTGTCTCTCTACATCACTAATCTGGATTGTTCGGGGCTGGCCGATAGATTCTGTTACAAAGGAGCAGAGAAAATGTCGGAGCTTTTCCATAGCAGTTGGCCAAAGCCAGAGGAAAACAGCAAGCACCCCGTTGGACTAATCTTGTTCAGATGCTTCTGGAAGCACATAGCCTTCACTGGTTTCCTTGCAATTATAAGGCTTGGACACCTCCTGGGAAGGCCTTGTTCTGATACTGATCCTGTATTTGGCAAAACCAACCGAAGTCCTCTCTGTGCACCAATTCAATTTCCACTCTCAGAAGCTCGGCATGCTCATTCACTGGTAATTTGTATTAATAGAGGTTCATATAATTTGTTAACATCTTTTACCAGTTTTGAAGTTGGATGTTATTCATTTCACCGAAATGCTGGGCCTGAAGATTTGGTTGCTAGGGAATCTATGCTTGCTAAAATCACAAAGAATCCTGGAGAATATAGTGAACCGTTCTTGAAGGAATTCAAGATATTTCATCAAGAACTCAAAGACTTCTTCAATGCTAGCAGTCTTGCTAAACAGCTAGAATCAATTCATGAATCTATGGATAAATATGGCATTTCAGCAATTAATTCATTCTTGGAGTGCAAAAAGATTCAGTATGAAGGTGATATATTGTGGCTATCAAGCTATAGCTTGGATAAGAACTTTCTTCTTTTCTTGTGTGTGTGTGGTGGGGGGCGAGCACTGTTGCATTCATCCTTTTCATTTGATTTTGGTACTCAGTTAGAAACTATTGTAAAGGGACTTGAAAGTGGCCTCAGGAATGATGCTCCAGATTCTGCAATAGCTATGTGTCAAAAGTGGCATCTCTGTGAGATTGGGCTTGAGGATTACTCATTTGTTCTTTTAAGTAGGTTTTTGTCATACCTTTTTCCTAATTTACTCCTTGACACATGTTGCAAAAAACATGGGGTACTTGCTAACTATTTATACGTACAGTGGACAAACGGGGTATCTGTCTTGGAGGCACTTTTGTTGGGTTCATTTTGGATAGTGGACACACGGGGGGTGTTATGTTTGTATTTGTTGAAATTCAGATGTATTTGGATAGAGGGGAGTCATGCATCTCTTCCTCTGGATGTGATTTATTTGTGGAGCAAAGTTAACATCTTTTTCTATAATTATATTTCCTCATGGTTCATGATGAAG

Predicted protein sequences of Glyma14g12470

Limit To All Plant Sequences

>Glyma14g12470.1   sequence type=predicted peptide   gene model=Glyma14g12470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SFLTVSSSSRLSFYFIYFFLLSLYITNLDCSGLADRFCYKGAEKMSELFHSSWPKPEENSKHPVGLILFRCFWKHIAFTGFLAIIRLGHLLGRPCSDTDPVFGKTNRSPLCAPIQFPLSEARHAHSLVICINRGSYNLLTSFTSFEVGCYSFHRNAGPEDLVARESMLAKITKNPGEYSEPFLKEFKIFHQELKDFFNASSLAKQLESIHESMDKYGISAINSFLECKKIQYEGDILWLSSYSLDKNFLLFLCVCGGGRALLHSSFSFDFGTQLETIVKGLESGLRNDAPDSAIAMCQKWHLCEIGLEDYSFVLLSRFLSYLFPNLLLDTCCKKHGVLANYLYVQWTNGVSVLEALLLGSFWIVDTRGVLCLYLLKFRCIWIEGSHASLPLDVIYLWSKVNIFFYNYISSWFMMK

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