SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54260 | AT | Annotation by Michelle Graham. TAIR10: DNA repair and meiosis protein (Mre11) | chr5:22032702-22037749 FORWARD LENGTH=720 | SoyBase | E_val: 3.00E-68 | ISS |
| GO:0006259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA metabolic process | SoyBase | N/A | ISS |
| GO:0006302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair | SoyBase | N/A | ISS |
| GO:0000785 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromatin | SoyBase | N/A | ISS |
| GO:0000791 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: euchromatin | SoyBase | N/A | ISS |
| GO:0000795 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: synaptonemal complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004519 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endonuclease activity | SoyBase | N/A | ISS |
| GO:0004527 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: exonuclease activity | SoyBase | N/A | ISS |
| GO:0004722 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0030145 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: manganese ion binding | SoyBase | N/A | ISS |
| PTHR10139 | Panther | MEIOTIC RECOMBINATION REPAIR PROTEIN 11 (MRE11) | JGI | ISS | |
| PF04152 | PFAM | Mre11 DNA-binding presumed domain | JGI | ISS | |
| UniRef100_B9SIE0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Meiotic recombination repair protein, putative n=1 Tax=Ricinus communis RepID=B9SIE0_RICCO | SoyBase | E_val: 4.00E-66 | ISS |
| UniRef100_I1M9B7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9B7_SOYBN | SoyBase | E_val: 3.00E-180 | ISS |
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Glyma14g12420 not represented in the dataset |
Glyma14g12420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma14g12420.1 sequence type=CDS gene model=Glyma14g12420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAATTTGATGGTTATTGTACACATAAAAAACACAATTTGGAAGTCCCTTCTACTTTGCTACATATATTTAAGGAAGTTCTGCAGCCCCATTACCCAGGGCATATATTATATGCATGCACATGCACCATCAGTGAACTCTTTACCCTTGGTTAAAATAAATCCAAAAAATGCGATAAATGAGCACTTCTTGCCATGCTTCCTAGACTTCATTGTGTGGGGCCATGAGCATGAATGTTTGGTTGACCCGCAGGAAGTTCCAGGGATGGGATTTCACATTTCGCAACCAGGGTCATCAGTTGCTACATCACTTATTGATGGAGAATCCAAGCCGAAGCATGTACTTCTTCAAGAAATTAAGGGAAATCAATATCTCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTAAGTATACTGAGGTTATACTAAAAGATAAGTCGGATATTGATCCCAATGATCAAAGTTCTATTCTTGAACACCTAGACAAAGTGGTATTGAATCTGTTTTGGGACTATAGTGAAATTTATGATTGGAACTTAACTTCAATTTTCTCAAATTATTTTTATAGAGGCCTATCCCTTCATCATACTATAGTATGGAGATTCTTGTCATTCTCCTTAGGTTCTTGGTGGCTCTACAAACATCTTGTAGAAGCAAAGCTTCATGGTGAATCAAGAATGATTCAAAGATGTTTTGATGATAACAATGATGATGATAACAAAAGATGA
>Glyma14g12420.1 sequence type=predicted peptide gene model=Glyma14g12420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVNLMVIVHIKNTIWKSLLLCYIYLRKFCSPITQGIYYMHAHAPSVNSLPLVKINPKNAINEHFLPCFLDFIVWGHEHECLVDPQEVPGMGFHISQPGSSVATSLIDGESKPKHVLLQEIKGNQYLPTKIPLMSVRPFKYTEVILKDKSDIDPNDQSSILEHLDKVVLNLFWDYSEIYDWNLTSIFSNYFYRGLSLHHTIVWRFLSFSLGSWWLYKHLVEAKLHGESRMIQRCFDDNNDDDNKR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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